Page Index - morinlab/LLMPP GitHub Wiki
768 page(s) in this GitHub Wiki:
- Home
- link-citations: true
- Welcome to Lymphopedia!
- Overview
- Common B-cell lymphomas
- History of lymphoma genes in common entities
- Rare B-cell lymphomas
- History of lymphoma genes in rare entities
- Regions commonly affected by aSHM
- Origins of the individual lymphoma genes
- All studies
- Studies selected for manual review
- Categorization of genes
- Tiers
- Additional Designations
- Other resources available for each gene
- B-cell lymphoma genome browser
- Gene expression overview
- References
- abateDistinctViralMutational2015a
- ABCA13
- ABCA3
- ABCC9
- ABI3BP
- ABL2
- ACAD9
- ACE
- ACTB
- ACTG1
- ADAMTS1
- ADAMTS5
- ADD2
- ADNP
- AGO4
- AICDA
- AKAP6
- albuquerqueEnhancingKnowledgeDiscovery2017a
- all_entities
- all_sankey
- ALPK2
- AMN
- AMOTL1
- ANK2
- ANKRD12
- ANKRD17
- AOC2
- ARHGAP20
- ARHGEF1
- ARHGEF15
- ARHGEF17
- ARID1A
- ARID1B
- ARID5B
- ARIH2
- arthurGenomewideDiscoverySomatic2018
- ashm
- ATM
- ATP11C
- ATP2C2
- ATP6AP1
- ATP6V1A
- ATP6V1B2
- ATR
- Audit of B‐cell Cancer Genes
- AXDND1
- B2M
- BACH2
- barariaCathepsinAlterationsInduce2020c
- BCL10
- BCL11A
- BCL2
- BCL6
- BCL7A
- BCOR
- BCR
- beaLandscapeSomaticMutations2013
- BIRC3
- BIRC6
- BL_FL_DLBCL_sankey
- BL_FL_DLBCL_sankey_methods
- BL_genes
- BL_sankey
- BL_tier1_sankey
- BLK
- BMP7
- bohleRoleEarlyBcell2013
- BRAF
- braggioGenomicAnalysisMarginal2012
- BRD4
- BRINP3
- BTBD3
- BTG1
- BTG2
- BTK
- burkhardtClinicalRelevanceMolecular2022b
- C16orf48
- C6orf103
- C6orf27
- CAD
- CADPS2
- CARD11
- CARD4
- CASP8
- CBFA2T3
- CBLB
- CCL4
- CCND1
- CCND3
- CCNF
- CCT6B
- CD22
- CD274
- CD36
- CD44
- CD58
- CD70
- CD74
- CD79A
- CD79B
- CD83
- CD9B
- CDC42BPB
- CDC73
- CDH17
- CDH2
- CDH5
- CDH8
- CDH9
- CDKN2A
- CDKN2C
- chapuyMolecularSubtypesDiffuse2018b
- CHD1
- CHD4
- CHD8
- cheungAcquiredTNFRSF14Mutations2010a
- CHMP4C
- CHST2
- CIITA
- CILP
- CISH
- CLGN
- CNBP
- CNKSR2
- CNOT2
- CNTNAP5
- COL11A1
- COL16A1
- COL4A2
- compagnoMutationsMultipleGenes2009a
- COQ7
- CPNE8
- CPS1
- CPXM2
- CREBBP
- CRIP1
- CRYBG3
- CSF2RB
- CTCF
- CTNNA2
- CTSS
- CXCR4
- CXCR5
- CYB5D1
- CYP2A6
- CYP4F22
- DAZAP1
- DCAF6
- DCP1B
- DDX10
- DDX3X
- deschGenotypingCirculatingTumor2020
- DGKB
- DHCR7
- DHDH
- DHX15
- DHX16
- DICER1
- DLBCL
- DLBCL_genes
- DLBCL_genes_temp
- DLBCL_sankey
- DLBCL_sankey1
- DLBCL_tier1_sankey
- DLC1
- DLGAP1
- DLGAP2
- DMD
- DNAH12
- DNAH5
- DNAH7
- DNAI1
- DNAJC6
- DNM2
- DNMT1
- DNMT3A
- DOCK1
- DOCK6
- DSG4
- DTX1
- DTX3L
- dunsCharacterizationDLBCLPMBL2021b
- DUSP2
- E2F2
- EBF1
- EDNRB
- EEF1A1
- EGR1
- EGR2
- EHD1
- EIF2AK3
- EIF2AK4
- EIF2C4
- EIF4A1
- ELP2
- EML2
- ENTPD3
- EP300
- EPHA7
- EPHB2
- EPPK1
- ERAP1
- ESX1
- ETS1
- ETV6
- EWSR1
- EXOSC6
- EZH1
- EZH2
- EZR
- FAM102A
- FAM129B
- FAM38B
- fanComprehensiveCharacterizationDriver2020b
- FANK1
- FAS
- FAT1
- FAT4
- FBXO11
- FBXW7
- FCRL3
- FGFR3
- FL_genes
- FL_sankey
- FLYWCH1
- FNBP1
- FNDC1
- FOXC1
- FOXO1
- FOXP1
- FTCD
- FUBP1
- FUT5
- FZD3
- FZR1
- GABRA1
- GABRA2
- GAK
- ganapathiGeneticLandscapeDural2016
- GBP7
- GCSAM
- Gene_lists
- GGTLA4
- GNA13
- GNAI2
- GNAS
- GOLGA5
- gomezUltraDeepSequencingReveals2023
- GPC5
- GPR126
- GPR98
- GPS2
- grandeGenomewideDiscoverySomatic2019
- GRB2
- GRHPR
- GRIK5
- GRIN2A
- GRM6
- GSG2
- GTSE1
- gunawardanaRecurrentSomaticMutations2014c
- H1FOO
- HDAC7
- HECW2
- HELLS
- HEPH
- HIST1H1B
- HIST1H1C
- HIST1H1D
- HIST1H1E
- HIST1H2AC
- HIST1H2AD
- HIST1H2AG
- HIST1H2AL
- HIST1H2AM
- HIST1H2BC
- HIST1H2BD
- HIST1H2BG
- HIST1H2BK
- HIST1H2BM
- HIST1H2BO
- HIST1H3B
- HIST1H3D
- HIST1H3G
- HIST1H3H
- HIST1H3I
- HIST1H3J
- HIST1H4E
- HIST1H4J
- HIST2H2BE
- HIST4H4
- HLA A
- HLA B
- HLA C
- HLA DMA
- HLA DMB
- HLA DQA1
- HLA DQB1
- HNF1B
- HNRNPH1
- HNRNPU
- HRAS
- HRNR
- hubschmannMutationalMechanismsShaping2021b
- HVCN1
- ICK
- ID3
- IER2
- IFNGR1
- IGLL5
- IKBKB
- IKBKE
- IKZF3
- IL13RA1
- IL16
- IL1RAPL2
- IL4R
- IL6
- INO80
- IRF1
- IRF2BP2
- IRF4
- IRF8
- ITPKB
- ITPR3
- JAK1
- JAK3
- jalladesExomeSequencingIdentifies2017
- jardinRecurrentMutationsExportin2016a
- johnstonCmycHypermutationBurkitt1992
- JUNB
- JUP
- KANK2
- KAT6A
- KCMF1
- KCNC2
- KCNK10
- KDM6A
- khodabakhshiRecurrentTargetsAberrant2012
- KIAA1671
- KIF26A
- KIFC3
- KIR3DL1
- KLF2
- KLHL14
- KLHL21
- KLHL26
- KLHL6
- KMT2C
- KMT2D
- KRAS
- KRTAP5 5
- krysiakRecurrentSomaticMutations2017b
- kwanhianMicroRNA142Mutated202012b
- lakeMutationsNFKBIAEncoding2009
- LAMA5
- LAPTM5
- LCOR
- lenzOncogenicCARD11Mutations2008
- LIMD2
- LIN54
- lohrDiscoveryPrioritizationSomatic2012a
- louissaintPediatrictypeNodalFollicular2016a
- loveGeneticLandscapeMutations2012
- LPHN3
- LPP
- LRP12
- LRP1B
- LRRN3
- LTB
- LUZP4
- LYN
- macros
- MAGEC1
- MAGEC2
- MAGT1
- MALAT1
- mansouriFrequentNFKBIEDeletions2016
- MAP2K1
- MAP3K14
- MAP3K6
- MAP4K4
- MAP7D1
- mareschalWholeExomeSequencing2016
- MARK1
- MCL1
- MCL_genes
- MCL_sankey
- MCRS1
- MECOM
- MEF2B
- MEF2C
- MET
- MFHAS1
- MGA
- MGEA5
- MIR142
- MIR155HG
- MKI67
- MME
- morinFrequentMutationHistonemodifying2011
- morinGeneticLandscapesRelapsed2016
- morinMutationalStructuralAnalysis2013
- morinSomaticMutationsAltering2010a
- mottokGenomicAlterationsCIITA2015b
- mottokIntegrativeGenomicAnalysis2019b
- MPDZ
- MPEG1
- MRGPRF
- MS4A1
- MSH2
- MSH6
- MSL2
- MTOR
- muppidiLossSignalingGa132014b
- MYB
- MYBPC2
- MYC
- MYCBP2
- MYD88
- MYH10
- MYLK
- MYO18A
- MYO1E
- MYOM2
- MZL_genes
- N2RF2
- nadeuGenomicEpigenomicInsights2020b
- NANOG
- NAV1
- NBEAL1
- NCOA3
- NCOA6
- NCOR1
- NCOR2
- NEAT1
- NEK1
- NF1
- NFKB1
- NFKB2
- NFKBIA
- NFKBIE
- NFKBIZ
- ngoOncogenicallyActiveMYD882011a
- NIN
- NLRC5
- NLRP5
- NLRP8
- NOA1
- NOL9
- NOTCH1
- NOTCH2
- NR2F2
- NRAS
- NRXN2
- NSD2
- NUP214
- ODZ3
- OGDHL
- ohgamiSTAT3MutationsAre2014
- okosunRecurrentMTORC1activatingRRAGC2016a
- OR13C2
- OR6K3
- OR8H2
- oricchioGeneticEpigeneticInactivation2017b
- OSBPL10
- ottoGeneticLesionsTRAF32012a
- P2RX5
- P2RY2
- P2RY8
- PABPC4L
- PACRG
- paneaWholeGenomeLandscape2019
- Papers
- PAPOLG
- pararajalingamCodingNoncodingDrivers2020
- PARK2
- parryWholeExomeSequencing2013
- PASD1
- PASK
- pasqualucciAnalysisCodingGenome2011
- pasqualucciHypermutationMultipleProtooncogenes2001a
- pasqualucciInactivatingMutationsAcetyltransferase2011a
- pasqualucciInactivationPRDM1BLIMP12006a
- PAX5
- PC
- PCBP1
- PCDHA11
- PCDHB11
- PCDHB2
- PCDHB6
- PCLO
- PCSK2
- PDCD11
- PDE4DIP
- PDGFC
- PDLIM3
- PDS5B
- PDZRN3
- PHF6
- PIK3CD
- PIK3R1
- PIM1
- PIM2
- PKD1
- PLA2G4D
- PLCG2
- PLXNB3
- PMBL_genes
- PNPO
- POGZ
- POLRMT
- POR
- POT1
- POU2AF1
- POU2F2
- PPP1R9B
- PPP4C
- PPP6R2
- PRDM1
- PREX1
- PRKCB
- PRKDC
- PRPS1
- PRSS22
- PRUNE2
- PTEN
- PTMA
- PTPN1
- PTPN23
- PTPN6
- PTPRD
- PTPRK
- PTPRN
- PXDNL
- PZP
- RAC2
- RAD9A
- RAF1
- RANBP2
- RANBP6
- RARA
- RB1
- RBM38
- RBM6
- RBP3
- RCOR1
- README
- reddyGeneticFunctionalDrivers2017
- reichelFlowSortingExome2015a
- RELN
- RET
- REV3L
- RFTN1
- RFX7
- RFXAP
- RGS1
- RGS4
- RHEX
- RHOA
- RHOH
- richterRecurrentMutationID32012a
- ritzRecurrentMutationsSTAT62009a
- RNF144B
- ROBO2
- ROCK1
- rossiAlterationBIRC3Multiple2011a
- rossiCodingGenomeSplenic2012c
- RPL10
- RPL1L
- RPL22
- RRAGC
- RUBCNL
- RUNX1
- rushtonGeneticEvolutionaryPatterns2020
- russler germainMutationsAssociatedProgression2023b
- S1PR1
- S1PR2
- SAL3
- SALL3
- SAMD5
- SAMD9L
- sankey_with_ashm
- SAPS2
- sarkozyMutationalLandscapeGray2021a
- SARM1
- SBF1
- SCG3
- schmitzBurkittLymphomaPathogenesis2012
- schmitzGeneticsPathogenesisDiffuse2018a
- schmitzTNFAIP3A20Tumor2009a
- schneiderAlterationsCD58Gene2015a
- schollMutationsRegionFAS2007
- SEL1L3
- SENP7
- SEPTIN9
- SERPINA9
- SETD1B
- SETD2
- SETD5
- SETDB1
- SF3B1
- SGK1
- SHANK1
- shinBRAFV600EMAP2K12015
- SHROOM3
- SI
- SIAH2
- SIN3A
- SLC17A6
- SLC29A2
- SLC34A2
- SLC38A8
- SLITRK6
- SMARCA4
- SMARCB1
- SMC1A
- SMEK1
- SNTB2
- SOCS1
- SP140
- SPEN
- spinaGeneticsNodalMarginal2016b
- SRPX
- SRRM2
- ST6GAL1
- STAB2
- STAT3
- STAT5B
- STAT6
- STXBP5
- SWAP70
- SYK
- SYN2
- SYNE1
- SYNGAP1
- SYPL1
- TAF1
- tanakaFrequentIncidenceSomatic1992
- TAP1
- TBC1D15
- TBC1D26
- TBC1D4
- TBC1D9B
- TBK1
- TBL1XR1
- TCF3
- TCL1A
- TCTN2
- TERT
- test citations
- test_FL_genes
- test_with_bib
- TET2
- TFAP4
- TGFBR2
- thomasGeneticSubgroupsInform2023
- tiacciBRAFMutationsHairycell2011a
- tiacciPervasiveMutationsJAKSTAT2018b
- TICRR
- tier1_bl
- tier1_dlbcl
- tier1_fl
- tier1_mcl
- tier1_pmbl_hl_gz
- tier2_bl
- tier2_dlbcl
- tier2_fl
- tier2_mcl
- tier2_pmbl_hl_gz
- TIGD6
- TIPARP
- TLR2
- TMEM30A
- TMSB4X
- TMSL3
- TNF
- TNFAIP3
- TNFRSF14
- TNIP1
- TNIP2
- TNRC6B
- TOP2A
- TOX
- TP53
- TPP1
- TPST2
- TRAF3
- TRAF6
- TRIP11
- TRIP12
- troenNOTCH2MutationsMarginal2008
- TRPM6
- TRRAP
- TTN
- UBE2A
- UBE2J1
- UBR5
- UNC5B
- UNC5C
- UNC5D
- USH2A
- USP7
- vandenbrandRecurrentMutationsGenes2017
- viganoSomaticIL4RMutations2018b
- VMA21
- VMP1
- VPS13B
- VWA7
- WAC
- WDFY3
- WDR7
- WDR87
- WDR90
- WEE1
- wenigerMutationsTumorSuppressor2006a
- WHAMM
- wienandGenomicAnalysesFlowsorted2019b
- wildaInactivationARFMDM2p53Pathway2004
- WNK1
- WNK2
- wuGeneticHeterogeneityPrimary2016
- XBP1
- XIRP2
- XPO1
- yanBCRTLRSignaling2012a
- yildizActivatingSTAT6Mutations2015c
- YY1
- YY1AP1
- ZAN
- ZBTB7A
- ZC3H12A
- ZCCHC11
- ZCCHC7
- ZEB2
- ZFAT
- ZFP36L1
- ZFX
- zhangGeneticHeterogeneityDiffuse2013
- zhangGenomicLandscapeMantle2014
- zhouSporadicEndemicBurkitt2019
- ZNF117
- ZNF217
- ZNF229
- ZNF292
- ZNF296
- ZNF423
- ZNF608
- ZNF85