FOXO1 - morinlab/LLMPP GitHub Wiki


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FOXO1

Overview

Mutations in the FOXO1 gene, which encodes a member of the forkhead family of transcription factors, play a significant role in diffuse large B-cell lymphoma (DLBCL). Mutations primarily occur in the first exon, with significant portions affecting the N-terminal region and the Forkhead DNA binding domain.1 These mutations are common in DLBCL, BL and, to a lesser extent, FL.2,3 FOXO1 mutations can contribute to resistance to certain therapies, such as anti-CD20-based immunotherapies, by repressing MS4A1 (CD20) expression.4

History

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timeline
    title Publication timing
      2011-07-27 : Morin : DLBCL
      2012-10-04 : Schmitz : BL
      2021-07-15 : Duns : PMBL
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Relevance tier by entity

Entity Tier Description
MZL 1 high-confidence MZL gene
PMBL 2 relevance in PMBL/cHL/GZL not firmly established[@dunsCharacterizationDLBCLPMBL2021b]
BL 1 high-confidence BL gene [@schmitzBurkittLymphomaPathogenesis2012]
DLBCL 1 high-confidence DLBCL gene[@morinFrequentMutationHistonemodifying2011]
FL 1 high-confidence FL gene [@morinFrequentMutationHistonemodifying2011]

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
BL GAMBL genomes+capture 23.33
BL Thomas cohort 28.00
BL Panea cohort 21.80
DLBCL GAMBL genomes 10.13
DLBCL Schmitz cohort 7.23
DLBCL Reddy cohort 2.40
DLBCL Chapuy cohort 2.14
FL GAMBL genomes 12.93

Mutation pattern and selective pressure estimates

Entity aSHM Significant selection dN/dS (missense) dN/dS (nonsense)
BL No Yes 14.841 5.170
DLBCL No No 6.936 0.000
FL No Yes 18.992 103.028

FOXO1 Hotspots

Chromosome Coordinate (hg19) ref>alt HGVSp
chr13 41240294 C>T R19Q
chr13 41240294 C>G R19P
chr13 41240294 C>A R19L
chr13 41240289 G>C R21G
chr13 41240289 G>A R21C
chr13 41240288 C>T R21H
chr13 41240288 C>G R21P
chr13 41240288 C>A R21L
chr13 41240286 AG>GC S22P
chr13 41240286 AG>GA S22P
chr13 41240286 A>G S22P
chr13 41240285 G>C S22W
chr13 41240281 G>T C23*
chr13 41240280 T>C T24A
chr13 41240279 G>A T24I
chr13 41240277 A>G W25R
chr13 41240275 C>T W25*
chr13 41240274 G>C P26A
chr13 41240274 G>A P26S
chr13 41240273 G>A P26L
chr13 41240271 G>C L27V

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

FOXO1 Expression

References

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