ST6GAL1 - morinlab/LLMPP GitHub Wiki
bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true nocite: | @arthurGenomewideDiscoverySomatic2018,
Relevance tier by entity
include:tables/table1_ST6GAL1.md
Mutation incidence in large patient cohorts (GAMBL reanalysis)
| Entity | source | frequency (%) |
|---|---|---|
| DLBCL | GAMBL genomes | 1.15 |
| DLBCL | Schmitz cohort | 1.49 |
| DLBCL | Reddy cohort | 0.90 |
| DLBCL | Chapuy cohort | 0.85 |
Mutation pattern and selective pressure estimates
include:tables/dnds_ST6GAL1.md
aSHM regions
| chr_name | hg19_start | hg19_end | region | regulatory_comment |
|---|---|---|---|---|
| chr3 | 186647943 | 186650177 | TSS-2 | NA |
| chr3 | 186739628 | 186740875 | TSS-1 | active_promoter |
| chr3 | 186709494 | 186721749 | intron-2 | NA |
| chr3 | 186782522 | 186784438 | intron-1 | strong_enhancer |
include:tables/browser_ST6GAL1.md
Expression
include:tables/mermaid_ST6GAL1.md