LPP - morinlab/LLMPP GitHub Wiki
bibliography: 'morinlab.bib'
csl: 'NLM.csl'
link-citations: true
nocite: |
@arthurGenomewideDiscoverySomatic2018,
TOC
Relevance tier by entity
include:tables/table1_LPP.md
Mutation incidence in large patient cohorts (GAMBL reanalysis)
| Entity |
source |
frequency (%) |
| DLBCL |
GAMBL genomes |
1.15 |
| DLBCL |
Schmitz cohort |
1.28 |
| DLBCL |
Reddy cohort |
1.30 |
| DLBCL |
Chapuy cohort |
0.85 |
Mutation pattern and selective pressure estimates
include:tables/dnds_LPP.md
aSHM regions
| chr_name |
hg19_start |
hg19_end |
region |
regulatory_comment |
| chr3 |
187771678 |
187801626 |
TSS-1 |
NA |
| chr3 |
187801627 |
187813568 |
TSS-2 |
NA |
| chr3 |
187813569 |
187955254 |
TSS-3 |
NA |
| chr3 |
187955255 |
187969220 |
TSS-4 |
NA |
| chr3 |
188261523 |
188327097 |
TSS-5 |
NA |
| chr3 |
188377178 |
188401951 |
intron-1 |
NA |
| chr3 |
188401952 |
188461879 |
intron-2 |
NA |
| chr3 |
188461880 |
188474683 |
intron-3 |
NA |
| chr3 |
188474684 |
188491248 |
intron-4 |
NA |
include:tables/browser_LPP.md
Expression
include:tables/mermaid_LPP.md
References