IL4R - morinlab/LLMPP GitHub Wiki


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IL4R

Overview

Mutations in IL4R have been identified in various types of B-cell lymphomas, particularly primary mediastinal large B-cell lymphoma (PMBCL) and DLBCL. IL4R is one of a number of genes affected by aberrant somatic hypermutation in B-cell lymphomas, which complicates the interpretation of mutations at this locus. IL4R mutations are found in approximately 24.2% of primary PMBCL cases. These mutations are commonly single nucleotide variants in exon 8, resulting in the I242N amino acid change. This leads to constitutive activation of the JAK-STAT signaling pathway and upregulation of downstream cytokine expression profiles and B cell-specific antigens.1,2 In DLBCL, IL4R mutations are more rare and tend to occur within the GCB subgroup.2

History

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timeline
    title Publication timing
      2018-05-03 : Vigan : PMBL
      2021-07-15 : Duns : DLBCL
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Relevance tier by entity

Entity Tier Description
PMBL 1 high-confidence PMBL/cHL/GZL gene[@viganoSomaticIL4RMutations2018b]
DLBCL 1-a aSHM target and high-confidence DLBCL gene[@dunsCharacterizationDLBCLPMBL2021b]

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
DLBCL GAMBL genomes 2.68
DLBCL Schmitz cohort 2.13
DLBCL Reddy cohort 2.50
DLBCL Chapuy cohort 3.85

Mutation pattern and selective pressure estimates

Entity aSHM Significant selection dN/dS (missense) dN/dS (nonsense)
BL Yes No 3.355 0
DLBCL Yes No 9.640 0
FL Yes No 0.000 0

aSHM regions

chr_name hg19_start hg19_end region regulatory_comment
chr16 27322895 27329423 TSS active_promoter

IL4R Hotspots

Chromosome Coordinate (hg19) ref>alt HGVSp
chr16 27367183 T>A I242N

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

IL4R Expression

References

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