KLHL14 - morinlab/LLMPP GitHub Wiki


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KLHL14

Overview

KLHL14 (Kelch-like family member 14) is a gene that has been identified as playing a role in B-cell lymphomas, particularly diffuse large B-cell lymphoma (DLBCL).1 KLHL14 has been identified as a recurrent target of somatic mutations in ABC DLBCLs. These mutations are a feature of the MCD genetic subgroup of DLBCL. The gene encodes a protein involved in the ubiquitin-proteasome system, and its inactivation leads to increased cell proliferation and survival, suggesting its role as a tumor suppressor.2 KLHL14 loss has been shown to BCR-dependent NF-κB activation and cell survival in DLBCL.2 This gene has some mutation hotspots but the patter of mutation overall is consistent with its role as a tumor suppressor gene.

History

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timeline
    title Publication timing
      2013-01-01 : Zhang : DLBCL
2017-10-10 : Reddy : DLBCL
2018-04-12 : Schmitz : DLBCL
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Relevance tier by entity

Entity Tier Description
DLBCL 1 high-confidence DLBCL gene[@zhangGeneticHeterogeneityDiffuse2013; @reddyGeneticFunctionalDrivers2017; @schmitzGeneticsPathogenesisDiffuse2018a]

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
DLBCL GAMBL genomes 4.59
DLBCL Schmitz cohort 6.60
DLBCL Reddy cohort 4.60
DLBCL Chapuy cohort 7.26

Mutation pattern and selective pressure estimates

Entity aSHM Significant selection dN/dS (missense) dN/dS (nonsense)
BL No No 0.000 0.000
DLBCL No No 3.154 2.846
FL No No 12.248 24.944

KLHL14 Hotspots

Chromosome Coordinate (hg19) ref>alt HGVSp
chr18 30349909 G>A L216F
chr18 30349905 T>G N217T
chr18 30349902 A>C F218C
chr18 30349882 G>C L225V

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

References

KLHL14 Expression

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