morinMutationalStructuralAnalysis2013 - morinlab/LLMPP GitHub Wiki

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@morinMutationalStructuralAnalysis2013

Summary of novel genes

Entity Tier 1 genes Tier 2 genes Tier 3 genes
DLBCL 9 23 7 
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This study, New Tier 1, 9
New Tier 1, DLBCL Tier 1, 9
This study, New Tier 2, 23
New Tier 2, DLBCL Tier 2, 23
This study, New Tier 3, 7
New Tier 3, DLBCL Tier 3, 7
All other DLBCL studies, DLBCL Tier 1, 116
All other DLBCL studies, DLBCL Tier 2, 187
All other DLBCL studies, DLBCL Tier 3, 380
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Novel genes reported in this study

Tier 1

New gene DLBCL tier Average variant quality QC outcome
CD83 1
CDKN2A 1
GNAI2 1
HIST1H1D 1
HIST1H2AC 1
MPEG1 1
RB1 1
TAF1 1
ZNF608 1

Tier 2

New gene DLBCL tier Average variant quality QC outcome
ABI3BP 2 ★ ★ ★ ☆ ☆ PASS
ARAP2 2
CDH9 2 ★ ★ ★ ☆ ☆ PASS
CNTNAP5 2 ★ ★ ★ ★ ☆ PASS
DNAH5 2 ★ ★ ★ ★ ☆ PASS
DSEL 2
DSG4 2 ★ ★ ★ ☆ ☆ PASS
FAT4 2 ★ ★ ★ ☆ ☆ PASS
HDAC7 2 ★ ★ ★ ☆ ☆ PASS
HIST1H2AG 2 ★ ★ ★ ☆ ☆ PASS
IFNGR1 2 ★ ★ ★ ★ ☆ PASS
MPDZ 2 ★ ★ ★ ★ ☆ PASS
NLRP5 2 ★ ★ ★ ☆ ☆ PASS
ODZ2 2 ★ ★ ★ ☆ ☆ PASS
P2RX5 2 ★ ★ ★ ☆ ☆ PASS
PASK 2 ★ ★ ★ ★ ☆ PASS
PCDHB11 2 ★ ★ ★ ☆ ☆ PASS
PDS5B 2 ★ ★ ★ ★ ☆ PASS
PRKCB 2 ★ ★ ★ ★ ☆ PASS
SAMD9L 2 ★ ★ ★ ☆ ☆ PASS
SRRM2 2 ★ ★ ★ ☆ ☆ PASS
SYPL1 2 ★ ★ ★ ☆ ☆ PASS
WDFY3 2 ★ ★ ★ ★ ☆ PASS

Tier 3

New gene DLBCL tier Average variant quality QC outcome
FAM38B 3 ★ ★ ☆ ☆ ☆ FAIL
FNDC1 3 ★ ★ ☆ ☆ ☆ FAIL
IER2 3 ★ ☆ ☆ ☆ ☆ FAIL
PKD1 3 ★ ★ ☆ ☆ ☆ FAIL
POGZ 3 ★ ★ ☆ ☆ ☆ FAIL
PTPN23 3 ★ ★ ☆ ☆ ☆ FAIL
SARM1 3 ★ ★ ☆ ☆ ☆ FAIL

Details

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