morinMutationalStructuralAnalysis2013 - morinlab/LLMPP GitHub Wiki
Entity | Tier 1 genes | Tier 2 genes | Tier 3 genes |
---|---|---|---|
DLBCL | 9 | 21 | 7 |
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sankey-beta
This study, New Tier 1, 9
New Tier 1, DLBCL Tier 1, 9
This study, New Tier 2, 21
New Tier 2, DLBCL Tier 2, 21
This study, New Tier 3, 7
New Tier 3, DLBCL Tier 3, 7
All other DLBCL studies, DLBCL Tier 1, 120
All other DLBCL studies, DLBCL Tier 2, 157
All other DLBCL studies, DLBCL Tier 3, 378
New gene | DLBCL tier | Average variant quality | QC outcome |
---|---|---|---|
CD83 | 1 | ||
CDKN2A | 1 | ||
GNAI2 | 1 | ||
HIST1H1D | 1 | ||
HIST1H2AC | 1 | ||
MPEG1 | 1 | ||
RB1 | 1 | ||
TAF1 | 1 | ||
ZNF608 | 1 |
New gene | DLBCL tier | Average variant quality | QC outcome |
---|---|---|---|
ABI3BP | 2 | ★ ★ ★ ☆ ☆ | PASS |
CDH9 | 2 | ★ ★ ★ ☆ ☆ | PASS |
CNTNAP5 | 2 | ★ ★ ★ ★ ☆ | PASS |
DNAH5 | 2 | ★ ★ ★ ★ ☆ | PASS |
DSG4 | 2 | ★ ★ ★ ☆ ☆ | PASS |
FAT4 | 2 | ★ ★ ★ ☆ ☆ | PASS |
HDAC7 | 2 | ★ ★ ★ ☆ ☆ | PASS |
HIST1H2AG | 2 | ★ ★ ★ ☆ ☆ | PASS |
IFNGR1 | 2 | ★ ★ ★ ★ ☆ | PASS |
MPDZ | 2 | ★ ★ ★ ★ ☆ | PASS |
NLRP5 | 2 | ★ ★ ★ ☆ ☆ | PASS |
ODZ3 | 2 | ★ ★ ★ ☆ ☆ | PASS |
P2RX5 | 2 | ★ ★ ★ ☆ ☆ | PASS |
PASK | 2 | ★ ★ ★ ★ ☆ | PASS |
PCDHB11 | 2 | ★ ★ ★ ☆ ☆ | PASS |
PDS5B | 2 | ★ ★ ★ ★ ☆ | PASS |
PRKCB | 2 | ★ ★ ★ ★ ☆ | PASS |
SAMD9L | 2 | ★ ★ ★ ☆ ☆ | PASS |
SRRM2 | 2 | ★ ★ ★ ☆ ☆ | PASS |
SYPL1 | 2 | ★ ★ ★ ☆ ☆ | PASS |
WDFY3 | 2 | ★ ★ ★ ★ ☆ | PASS |
New gene | DLBCL tier | Average variant quality | QC outcome |
---|---|---|---|
FAM38B | 3 | ★ ★ ☆ ☆ ☆ | FAIL |
FNDC1 | 3 | ★ ★ ☆ ☆ ☆ | FAIL |
IER2 | 3 | ★ ☆ ☆ ☆ ☆ | FAIL |
PKD1 | 3 | ★ ★ ☆ ☆ ☆ | FAIL |
POGZ | 3 | ★ ★ ☆ ☆ ☆ | FAIL |
PTPN23 | 3 | ★ ★ ☆ ☆ ☆ | FAIL |
SARM1 | 3 | ★ ★ ☆ ☆ ☆ | FAIL |