lohrDiscoveryPrioritizationSomatic2012 - morinlab/LLMPP GitHub Wiki
| Entity | Tier 1 genes | Tier 2 genes | Tier 3 genes |
|---|---|---|---|
| DLBCL | 14 | 27 | 0 |
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sankey-beta
This study, New Tier 1, 14
New Tier 1, DLBCL Tier 1, 14
This study, New Tier 2, 27
New Tier 2, DLBCL Tier 2, 27
This study, New Tier 3, 0
New Tier 3, DLBCL Tier 3, 0
All other DLBCL studies, DLBCL Tier 1, 111
All other DLBCL studies, DLBCL Tier 2, 183
All other DLBCL studies, DLBCL Tier 3, 387
| New gene | DLBCL tier | Average variant quality | QC outcome |
|---|---|---|---|
| ACTB | 1 | ||
| DUSP2 | 1 | ||
| ETV6 | 1 | ||
| HIST1H1E | 1 | ||
| HIST1H2BC | 1 | ||
| HIST1H3B | 1 | ||
| HLA-A | 1 | ||
| HLA-B | 1 | ||
| JUNB | 1 | ★ ★ ★ ☆ ☆ | PASS |
| KRAS | 1 | ||
| P2RY8 | 1 | ||
| POU2F2 | 1 | ||
| TBL1XR1 | 1 | ||
| UBE2A | 1 |
| New gene | DLBCL tier | Average variant quality | QC outcome |
|---|---|---|---|
| BCR | 2 | ||
| CPS1 | 2 | ||
| GABRA1 | 2 | ||
| H1FOO | 2 | ||
| HIST1H2AL | 2 | ||
| HIST1H2BO | 2 | ||
| HIST1H3A | 2 | ||
| KRTAP5-5 | 2 | ||
| OR6K3 | 2 | ||
| PASD1 | 2 | ||
| PCDHB6 | 2 | ||
| PCLO | 2 | ||
| PDGFC | 2 | ||
| PTPN21 | 2 | ||
| RBP3 | 2 | ||
| S1PR1 | 2 | ||
| SLC38A8 | 2 | ||
| SLITRK6 | 2 | ||
| SRPX | 2 | ||
| SYN2 | 2 | ||
| TBP | 2 | ||
| TMSL3 | 2 | ||
| TNF | 2 | ||
| UNC5C | 2 | ||
| UNC5D | 2 | ||
| VAX1 | 2 | ||
| ZNF385B | 2 |
