KRAS - morinlab/LLMPP GitHub Wiki


bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true

KRAS

Overview

KRAS mutations are rare but occur in some cases of DLBCL.1 These often affect the most common KRAS hotspot sites that are mutated in other solid cancers (G12 and G13).

History

%%{init: { 'logLevel': 'debug', 'theme': 'dark' } }%%
timeline
    title Publication timing
      2012-03-06 : Lohr : DLBCL
Loading

Relevance tier by entity

Entity Tier Description
DLBCL 1 high-confidence DLBCL gene[@lohrDiscoveryPrioritizationSomatic2012a]

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
DLBCL GAMBL genomes 1.91
DLBCL Schmitz cohort 3.62
DLBCL Reddy cohort 1.70
DLBCL Chapuy cohort 2.56

Mutation pattern and selective pressure estimates

Entity aSHM Significant selection dN/dS (missense) dN/dS (nonsense)
BL No No 27.314 0
DLBCL No No 5.336 0
FL No No 9.959 0

KRAS Hotspots

Chromosome Coordinate (hg19) ref>alt HGVSp
chr12 25398285 C>A G12C
chr12 25398284 C>T G12D
chr12 25398284 C>A G12V
chr12 25398282 C>A G13C
chr12 25398281 C>T G13D

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

KRAS Expression

References

⚠️ **GitHub.com Fallback** ⚠️