CXCR4 - morinlab/LLMPP GitHub Wiki


bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true nocite: | @paneaWholeGenomeLandscape2019, @hubschmannMutationalMechanismsShaping2021, @khodabakhshiRecurrentTargetsAberrant2012, @krysiakRecurrentSomaticMutations2017,

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Overview

CXCR4 is one of a number of genes affected by aberrant somatic hypermutation in B-cell lymphomas, which complicates the interpretation of mutations at this locus. No notable hot spots have been described in this gene in the context of the cancers listed below. The mutation pattern in DLBCL implies the preferential accumulation of inactivating mutations.

Mutations in this gene were first described in DLBCL in 2012 [@khodabakhshiRecurrentTargetsAberrant2012] in FL in 2021 [@hubschmannMutationalMechanismsShaping2021] and in BL in 2019.[@paneaWholeGenomeLandscape2019]

Experimental Evidence

Driver mutations affecting this gene in DLBCL have been experimentally demonstrated to cause a reduction or loss of function (LOF).[@zmajkovicovaGenotypephenotypeCorrelationsWHIM2022]

Relevance tier by entity

include:tables/table1_CXCR4.md

Mutation incidence in large patient cohorts (GAMBL reanalysis)

DLBCL

include:tables/DLBCL_CXCR4.md

FL

include:tables/FL_CXCR4.md

Mutation pattern and selective pressure estimates

include:tables/dnds_CXCR4.md

aSHM regions

chr_name hg19_start hg19_end region regulatory_comment
chr2 136874728 136875461 intron weak_promoter

include:tables/browser_CXCR4.md

Expression

Representative Mutations

BL

Rating ★ ★ ★ ★ ★

include:tables/mermaid_CXCR4.md

References