CXCR4 - morinlab/LLMPP GitHub Wiki
bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true nocite: | @paneaWholeGenomeLandscape2019, @hubschmannMutationalMechanismsShaping2021, @khodabakhshiRecurrentTargetsAberrant2012, @krysiakRecurrentSomaticMutations2017,
Overview
CXCR4 is one of a number of genes affected by aberrant somatic hypermutation in B-cell lymphomas, which complicates the interpretation of mutations at this locus. No notable hot spots have been described in this gene in the context of the cancers listed below. The mutation pattern in DLBCL implies the preferential accumulation of inactivating mutations.
Mutations in this gene were first described in DLBCL in 2012 [@khodabakhshiRecurrentTargetsAberrant2012] in FL in 2021 [@hubschmannMutationalMechanismsShaping2021] and in BL in 2019.[@paneaWholeGenomeLandscape2019]
Experimental Evidence
Driver mutations affecting this gene in DLBCL have been experimentally demonstrated to cause a reduction or loss of function (LOF).[@zmajkovicovaGenotypephenotypeCorrelationsWHIM2022]
Relevance tier by entity
include:tables/table1_CXCR4.md
Mutation incidence in large patient cohorts (GAMBL reanalysis)
DLBCL
FL
Mutation pattern and selective pressure estimates
aSHM regions
chr_name | hg19_start | hg19_end | region | regulatory_comment |
---|---|---|---|---|
chr2 | 136874728 | 136875461 | intron | weak_promoter |
include:tables/browser_CXCR4.md
Expression
Representative Mutations
BL
Rating ★ ★ ★ ★ ★
include:tables/mermaid_CXCR4.md