ashm - morinlab/LLMPP GitHub Wiki

region name details DLBCL incidence FL incidence CLL incidence BL incidence
ACTB_TSS chr7:5568297-5570856 17.38 10.58 0.94 4.25
ACTG1_intron chr17:79478289-79479959 8.85 4.97 0 3.47
AICDA_TSS chr12:8762328-8765099 17.38 6.91 2.35 1.54
BACH2_TSS chr6:90981034-91016134 49.84 47.52 9.86 71.81
BCL11A_TSS chr2:60773789-60783486 20.98 11.45 2.35 6.18
BCL2L11_TSS chr2:111874854-111882174 12.13 0.86 0 3.47
BCL2_TSS chr18:60982728-60988342 41.97 81.43 3.76 3.47
BCL2_intron chr18:60796984-60814103 23.11 31.97 0.94 6.56
BCL6_Intergenic-1 chr3:187615533-187625659 16.39 7.13 1.88 9.65
BCL6_Intergenic-2 chr3:187625659-187638101 15.74 6.91 0.47 11.97
BCL6_Intergenic-3 chr3:187657518-187665996 42.79 31.32 11.27 29.34
BCL6_Intergenic-4 chr3:187675741-187690717 20.98 11.23 4.69 15.83
BCL6_Intergenic-5 chr3:187690717-187705000 24.59 13.39 5.16 15.83
BCL6_TSS chr3:187458526-187464632 78.52 73 17.37 57.14
BCL7A_TSS chr12:122456912-122464036 61.31 69.55 7.98 50.19
BCR_TSS chr22:23522060-23528313 8.2 7.78 0.47 9.65
BIRC3_TSS chr11:102188170-102190077 34.59 25.05 2.82 16.6
BLK_TSS chr8:11347723-11355318 21.64 12.53 3.29 14.29
BTG1_TSS chr12:92537999-92539598 29.67 17.71 1.88 3.86
BTG2_intron chr1:203274698-203275778 56.72 22.25 8.45 42.86
C13orf18_TSS chr13:46957278-46963342 28.69 12.53 2.82 15.06
CD44_TSS chr11:35156769-35164248 6.72 0.65 0.47 3.86
CD74_TSS chr5:149790977-149792349 19.51 12.53 0.94 3.86
CD83_TSS chr6:14118026-14120025 27.21 15.55 1.41 4.25
CIITA_TSS chr16:10970795-10975465 41.48 40.39 1.41 6.95
CXCR4_intron chr2:136874728-136875461 37.87 29.37 2.35 32.82
CXCR5_TSS chr11:118754458-118756514 10 3.02 0.47 3.47
DDX3X_intergenic chrX:42800580-42804184 15.74 8.42 0.94 2.7
DTX1_TSS chr12:113492311-113497546 46.89 33.05 6.57 32.82
DUSP2_intron-1 chr2:96808901-96811913 16.72 4.54 0.94 6.18
EBF1_TSS chr5:158500476-158532769 27.54 18.14 2.82 14.29
EIF2Ak3_TSS chr2:88925456-88927581 2.95 4.54 0.94 6.95
EIF2Ak3_intron chr2:88904839-88909096 12.79 12.31 0.94 6.56
ETS1_TSS-2 chr11:128388492-128394163 26.72 15.12 0.47 16.99
ETS1_intron chr11:128339774-128345731 7.38 4.54 0.94 2.7
ETV6_TSS chr12:11796001-11812968 16.07 3.24 1.41 7.34
EZR_TSS chr6:159237903-159240216 12.95 12.1 2.82 5.79
FAM102A_TSS chr9:130740362-130744800 10.82 5.18 0 6.18
FANK1_TSS chr10:127578912-127591133 2.79 0.86 0 6.56
FCRL3_TSS chr2:157669490-157671299 1.15 0.22 0 1.54
FNBP1_TSS chr9:132800698-132805491 17.21 12.1 0.47 4.25
FOXP1_TSS-1 chr3:71626341-71635648 9.34 5.83 0.47 14.29
FOXP1_TSS-2 chr3:71350633-71357665 3.77 0.65 0.94 3.47
FOXP1_TSS-3 chr3:71176427-71180960 10.98 2.38 4.69 2.7
FOXP1_TSS-4 chr3:71104986-71119518 14.43 1.94 0 6.95
FOXP1_intron-1a chr3:71550753-71551478 5.9 3.46 0.47 6.56
FOXP1_intron-1b chr3:71503103-71504870 2.46 3.24 0.94 1.93
GRHPR_TSS chr9:37423010-37425279 14.1 1.3 0 0.77
HNRNPU_TSS chr1:245023502-245029083 3.77 3.67 0.47 8.88
ID3_TSS chr1:23885584-23885835 1.48 0.65 0 46.33
IGLL5_TSS chr22:23229554-23232042 71.15 68.9 28.64 71.04
IKZF3_TSS-1 chr17:37928959-37940119 15.25 6.26 1.88 7.72
IKZF3_TSS-2 chr17:38015776-38024832 11.64 4.97 1.88 5.41
IL4R_TSS chr16:27322895-27329423 20.66 22.46 1.41 3.47
IRF1_TSS chr5:131823933-131826458 6.89 1.51 0.47 2.32
IRF4_TSS chr6:390572-394093 14.43 0.22 2.35 1.54
IRF8_TSS chr16:85931918-85933977 28.85 23.33 3.76 8.88
ITPKB_TSS chr1:226920563-226927885 12.46 5.62 2.35 4.25
ITPKB_intron chr1:226864857-226873452 7.38 3.24 1.41 1.93
ITPKB_intron-1 chr1:226921088-226927982 12.46 5.62 2.35 4.25
KLF2_TSS chr19:16434978-16439011 12.79 5.4 0.94 3.09
KLHL21_TSS chr1:6661482-6662702 6.07 1.3 0.47 1.93
KLHL6_TSS chr3:183269360-183274139 14.59 7.56 1.88 4.63
LAPTM5_TSS chr1:31229012-31232011 7.7 5.62 0 2.7
LPP_TSS-1 chr3:187771678-187801626 16.39 10.8 0 16.99
LPP_TSS-2 chr3:187801627-187813568 19.51 10.8 2.35 11.58
LPP_TSS-3 chr3:187813569-187955254 44.43 29.37 10.33 41.7
LPP_TSS-4 chr3:187955255-187969220 38.85 36.5 6.1 25.48
LPP_TSS-5 chr3:188261523-188327097 27.05 14.04 5.63 26.25
LPP_intron-1 chr3:188377178-188401951 7.87 3.24 1.41 8.11
LPP_intron-2 chr3:188401952-188461879 26.89 14.04 6.57 18.53
LPP_intron-3 chr3:188461880-188474683 24.92 16.41 6.1 16.6
LPP_intron-4 chr3:188474684-188491248 8.69 3.24 1.88 4.25
LRMP_TSS chr12:25204045-25213569 36.07 22.89 2.82 15.83
LTB_intron-1 chr6:31548325-31550717 26.56 26.78 4.23 13.13
MALAT1_ncRNA chr11:65265237-65268359 24.43 11.23 2.82 8.11
MCL1_intron chr1:150550814-150552135 6.23 1.94 0.94 4.25
MEF2B_TSS chr19:19279635-19281441 8.03 2.59 0.47 3.09
MEF2C_TSS-1 chr5:88182244-88206620 7.38 4.1 1.88 5.41
MEF2C_TSS-2 chr5:88174374-88182243 8.69 6.48 2.35 5.79
MEF2C_TSS-3 chr5:88131209-88174373 13.28 10.15 1.88 12.36
MIR155HG_TSS chr21:26934372-26937651 10.66 3.67 0.47 3.86
MS4A1_TSS chr11:60223385-60225310 9.34 4.54 0 0.39
MYC_TSS chr8:128748352-128749427 17.38 0.43 0 82.24
MYO1E_TSS chr15:59658991-59671152 18.03 14.9 3.29 13.51
NCOA3_TSS chr20:46128611-46138099 17.05 10.8 1.41 6.18
NEAT1_ncRNA chr11:65190369-65192380 20.66 7.56 1.88 8.11
NFKBIZ_TSS-1 chr3:101546669-101547704 1.97 0.65 0 0
NFKBIZ_TSS-2 chr3:101568239-101569274 3.44 0.86 0 0.77
OSBPL10_TSS-1 chr3:32020518-32024930 21.97 11.23 0 5.02
P2RX5_TSS chr17:3597616-3599572 6.39 2.16 0 1.16
PAX5_TSS-1 chr9:37029849-37037154 26.23 17.71 1.41 11.97
PAX5_distal-enhancer-1 chr9:37369209-37372160 29.84 28.08 7.98 21.24
PAX5_distal-enhancer-2 chr9:37382267-37385854 22.46 19.22 0.94 5.41
PAX5_distal-enhancer-3 chr9:37395932-37409239 46.72 45.57 9.39 21.62
PAX5_intron-1 chr9:37023396-37027663 51.15 47.73 5.16 13.51
PIM1_TSS chr6:37138104-37139804 30.66 18.79 0.47 5.02
PIM2_TSS chrX:48774756-48776255 12.95 0.86 1.41 1.93
POU2AF1_TSS chr11:111248078-111250224 20.33 27.21 1.88 11.58
PTMA_TSS chr2:232572640-232574297 10.49 5.62 0 7.34
PTPN1_TSS chr20:49120482-49140477 15.57 6.05 0.94 9.27
RCC1_TSS chr1:28832551-28836339 10.82 7.13 0.47 6.56
RFTN1_TSS chr3:16546433-16556786 29.84 21.6 0.94 14.29
RHEX_TSS chr1:206285239-206288105 10.49 2.16 2.82 0
RHOH_TSS chr4:40193105-40204231 56.07 55.51 3.29 27.03
RNF144B_TSS chr6:25861094-25868788 2.79 0.43 0.94 5.02
S1PR2_TSS chr19:10340142-10341764 22.13 15.55 3.76 10.04
SEL1L3_TSS chr4:25861094-25868788 25.57 20.3 2.35 12.36
SEPTIN9_intron-1 chr17:75424734-75440956 7.54 2.59 2.35 5.79
SEPTIN9_intron-2 chr17:75443766-75451177 15.74 5.18 0.94 6.56
SEPTIN9_intron-3 chr17:75453203-75471471 8.69 3.46 1.88 8.49
SERPINA9_TSS chr14:94940587-94942549 22.13 12.1 2.82 8.49
SGK1_TSS-1 chr6:134487960-134499859 23.11 10.15 0 9.65
SOCS1_intron-1 chr16:11347512-11350007 24.43 19.01 0.47 4.25
ST6GAL1_TSS-1 chr3:186739628-186740875 30.66 25.49 1.41 15.44
ST6GAL1_TSS-2 chr3:186647943-186650177 14.26 4.1 1.41 3.09
ST6GAL1_intron-1 chr3:186782522-186784438 38.2 19.01 4.69 20.08
ST6GAL1_intron-2 chr3:186709494-186721749 32.13 25.49 3.29 9.27
TBC1D4_intron chr13:75982519-75986015 10 5.62 0.47 5.41
TCL1A_TSS chr14:96179535-96180366 23.44 19.65 7.04 44.02
TMSB4X_intron chrX:12993308-12994511 36.89 22.89 2.35 11.58
TSPOAP1_intergenic chr17:56407732-56410140 42.79 29.59 3.29 27.41
UBE2J1_TSS chr6:90059730-90063703 11.31 4.32 0 5.02
WEE1_intron chr11:9595246-9599502 9.51 3.02 1.88 4.25
XBP1_TSS chr22:29194943-29197461 12.46 10.8 0 3.09
ZCCHC7_intron-1 chr9:37329706-37340398 23.28 20.95 3.29 13.13
ZCCHC7_intron-2 chr9:37275952-37306152 24.26 20.95 6.1 18.92
ZCCHC7_intron-3 chr9:37312655-37328260 18.03 9.07 0.94 16.99
ZCCHC7_intron-4 chr9:37192080-37207549 19.84 16.85 4.23 13.9
ZFP36L1_TSS chr14:69257848-69259739 42.79 30.02 5.63 20.85