TOX - morinlab/LLMPP GitHub Wiki

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bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true nocite: | @schmitzGeneticsPathogenesisDiffuse2018, @reddyGeneticFunctionalDrivers2017, @chapuyMolecularSubtypesDiffuse2018, @hubschmannMutationalMechanismsShaping2021,

TOC

Relevance tier by entity

include:tables/table1_TOX.md

Mutation incidence in large patient cohorts (GAMBL reanalysis)

DLBCL

include:tables/DLBCL_TOX.md

Mutation pattern and selective pressure estimates

include:tables/dnds_TOX.md

TOX Hotspots

Chromosome	Coordinate (hg19)	ref>alt	HGVSp
chr8	60031445	C>G	K34N
chr8	60031445	C>T	K34=
chr8	60031446	T>G	K34T

include:tables/browser_TOX.md

Expression

include:tables/mermaid_TOX.md

References