CTCF - morinlab/LLMPP GitHub Wiki


bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true

CTCF

<<Warn("The variants reported in this gene in BL failed QC")>>

History

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timeline
    title Publication timing
      2019-09-26 : Panea : BL

Relevance tier by entity

Entity Tier Description
BL 3 Retired, Failed QC[@paneaWholeGenomeLandscape2019]

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
BL GAMBL genomes+capture 3.0
BL Thomas cohort 1.7
BL Panea cohort 6.9

Mutation pattern and selective pressure estimates

Entity aSHM Significant selection dN/dS (missense) dN/dS (nonsense)
BL No No 5.383 0
DLBCL No No 4.542 0
FL No No 0.000 0

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

CTCF Expression

Representative Mutations

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References