PTPRK - morinlab/LLMPP GitHub Wiki
bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true
PTPRK
<<Warn("The variants reported in this gene in DLBCL failed QC")>>
History
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timeline
title Publication timing
2017-10-10 : Reddy : DLBCL
Relevance tier by entity
Entity | Tier | Description |
---|---|---|
![]() |
3 | Retired, Failed QC[@reddyGeneticFunctionalDrivers2017] |
Mutation incidence in large patient cohorts (GAMBL reanalysis)
Entity | source | frequency (%) |
---|---|---|
DLBCL | GAMBL genomes | 4.21 |
DLBCL | Schmitz cohort | 3.62 |
DLBCL | Reddy cohort | 3.30 |
DLBCL | Chapuy cohort | 6.41 |
Mutation pattern and selective pressure estimates
Entity | aSHM | Significant selection | dN/dS (missense) | dN/dS (nonsense) |
---|---|---|---|---|
BL | No | No | 2.146 | 0.000 |
DLBCL | No | No | 1.555 | 1.797 |
FL | No | No | 1.875 | 5.021 |
View coding variants in ProteinPaint hg19 or hg38
View all variants in GenomePaint hg19 or hg38
PTPRK Expression
All Mutations
Reddy_2095T Reddy_2135T Reddy_2215T Reddy_2234T Reddy_2261T Reddy_2293T Reddy_2469T Reddy_2567T Reddy_2657T Reddy_2664T Reddy_2764T Reddy_2826T Reddy_2838T Reddy_2956T Reddy_3470T Reddy_3525T Reddy_3620T Reddy_3629T Reddy_3637T Reddy_3682T Reddy_3689T Reddy_3698T Reddy_3756T Reddy_3757T Reddy_3759T Reddy_3780T Reddy_3872T Reddy_3893T Reddy_3911T Reddy_3937T Reddy_823T