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bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true

PTPRK

<<Warn("The variants reported in this gene in DLBCL failed QC")>>

History

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timeline
    title Publication timing
      2017-10-10 : Reddy : DLBCL

Relevance tier by entity

Entity	Tier	Description
	3	Retired, Failed QC[@reddyGeneticFunctionalDrivers2017]

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity	source	frequency (%)
DLBCL	GAMBL genomes	4.21
DLBCL	Schmitz cohort	3.62
DLBCL	Reddy cohort	3.30
DLBCL	Chapuy cohort	6.41

Mutation pattern and selective pressure estimates

Entity	aSHM	Significant selection	dN/dS (missense)	dN/dS (nonsense)
BL	No	No	2.146	0.000
DLBCL	No	No	1.555	1.797
FL	No	No	1.875	5.021

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

PTPRK Expression

All Mutations

Reddy_2095T Reddy_2135T Reddy_2215T Reddy_2234T Reddy_2261T Reddy_2293T Reddy_2469T Reddy_2567T Reddy_2657T Reddy_2664T Reddy_2764T Reddy_2826T Reddy_2838T Reddy_2956T Reddy_3470T Reddy_3525T Reddy_3620T Reddy_3629T Reddy_3637T Reddy_3682T Reddy_3689T Reddy_3698T Reddy_3756T Reddy_3757T Reddy_3759T Reddy_3780T Reddy_3872T Reddy_3893T Reddy_3911T Reddy_3937T Reddy_823T

References