PDE4DIP - morinlab/LLMPP GitHub Wiki
bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true
PDE4DIP
History
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timeline
title Publication timing
2018-05-01 : Chapuy : DLBCL
Relevance tier by entity
Entity | Tier | Description |
---|---|---|
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2 | relevance in DLBCL not firmly established[@chapuyMolecularSubtypesDiffuse2018b] |
Mutation incidence in large patient cohorts (GAMBL reanalysis)
Entity | source | frequency (%) |
---|---|---|
DLBCL | GAMBL genomes | NA |
DLBCL | Schmitz cohort | 3.83 |
DLBCL | Reddy cohort | 5.31 |
DLBCL | Chapuy cohort | 8.55 |
Mutation pattern and selective pressure estimates
Entity | aSHM | Significant selection | dN/dS (missense) | dN/dS (nonsense) |
---|---|---|---|---|
BL | No | No | 1.344 | 1.032 |
DLBCL | No | No | 1.467 | 5.897 |
FL | No | No | 2.010 | 7.866 |
View coding variants in ProteinPaint hg19 or hg38
View all variants in GenomePaint hg19 or hg38
PDE4DIP Expression
All Mutations
DLBCL-RICOVER_107-Tumor DLBCL-RICOVER_288-Tumor DLBCL-RICOVER_384-Tumor DLBCL-RICOVER_496-Tumor