Page Index - mauriceling/mauriceling.github.io GitHub Wiki

1256 page(s) in this GitHub Wiki:

• Home
• Maurice HT Ling
• 100 Manuscripts in 20 Years
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• 1049 Days
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• 18 Months
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• 18 Months of Uncertainty
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• 2020 冬至
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• 2025
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• 45 岁了
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• 45 岁了 2
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• 46 之愿
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• 50 不系
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• 8000 Days
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• 999 Days
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• A 10 Year Systematic Review (1 January 2014 to 1 January 2024) on the Potential Health Benefits of Quinoa
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• A 10 Year Systematic Review (2013 to 2022) on Effects of Diet on Migraine
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• A 5 Year Systematic Review (01 April 2017 to 31 March 2022) on the Causes of Abdominal Obesity
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• A 5 Year Systematic Review (01 November 2019 to 31 October 2024) Ergogenic Effects of Caffeine on Endurance and Strength Performance
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• A 5 Year Systematic Review (1 November 2019 to 31 October 2023) on the Benefits of the “Miracle Tree” (Moringa oleifera)
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• A 5 Year Systematic Review (2018 to 2022) on The Effectiveness of Mediterranean Diet in Preventing Alzheimer’s Disease
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• A Better 2024
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• A Case Study using Mitochondrial Genomes of the Order Diprotodontia (Australasian Marsupials) Suggests that Single Ortholog is Not Sufficient for Phylogeny.
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• A Computational Approach to Understand the Human Thought Process
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• A Cryptography Method Inspired by Jigsaw Puzzles.
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• A genetic algorithm framework grounded in biology.
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• A Good Virus
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• A Personal Narrative of 6 Pre University Research Projects Over 7 Years (2009 2015) Yielding 19 Manuscripts.
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• A Predictor for Predicting Escherichia coli Transcriptome and the Effects of Gene Perturbations.
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• A Shelf Against Forgetting
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• A Simulation Study on the Effects of Founding Population Size and Number of Alleles Per Locus on the Observed Population Genetic Profile Implications to Broodstock Management.
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• A Simulation Study on the Effects of Media Composition on the Growth Rate of Escherichia coli MG1655 using iAF1260 Model.
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• A Systematic Review (Before 01 February 2024) on the Health Benefits of Kimchi
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• A Systematic Review (Before 01 January 2025) on Oat Consumption to Reduce Stroke Risk
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• A Systematic Review (Before 15 October 2024) on the Effects of Ketogenic Diet on Blood Lipid Levels
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• A Systematic Review (Before 16 October 2024) on the Potential Anti Hypertensive Effects of Oats and or Banana
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• A Systematic Review (Before 31 August 2024) on the Applications of Yarrowia lipolytica
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• A Systematic Review on the Sufficiency of PubMed and Google Scholar for Biosciences.
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• A Systematic Scoping Review on the Current Applications of Environmental DNA (eDNA).
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• A Tale of Two Archives
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• Ab Initio Whole Cell Kinetic Model of Bifidobacterium bifidum BGN4 (bbfMA24)
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• Ab Initio Whole Cell Kinetic Model of Lactobacillus acidophilus NCFM (lacAS24)
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• Ab Initio Whole Cell Kinetic Model of Limosilactobacillus fermentum EFEL6800 (lfeTS24)
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• Ab Initio Whole Cell Kinetic Model of Stutzerimonas balearica DSM 6083 (pbmKZJ23)
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• Ab Initio Whole Cell Kinetic Model of Yarrowia lipolytica CLIB122 (yliYKY24)
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• Ab Initio Whole Cell Kinetic Models of Escherichia coli BL21 (ebeTBSW25) and MG1655 (ecoMAL25)
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• Abstracts and Other Un Refereed Works
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• Abundance
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• Adaptation of Escherichia coli ATCC 8739 to 11% NaCl.
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• Adaptation of Whole Cell Kinetic Model Template, UniKin1, to Escherichia coli Whole Cell Kinetic Model, ecoJC20.
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• AdvanceSyn Toolkit An Open Source Suite for Model Development and Analysis in Biological Engineering.
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• Advancing Personalized Medicine through the Application of Whole Exome Sequencing and Big Data Analytics.
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• Alexander Govern test
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• Ample Abundance
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• An Anthological Review of Research Utilizing MontyLingua, a Python Based End to End Text Processor.
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• An Artificial Life Simulation Library Based on Genetic Algorithm, 3 Character Genetic Code and Biological Hierarchy.
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• Analyzing Transcriptome Phenotype Correlations
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• Analyzing Transcriptome Phenotype Correlations.
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• Anchored Light
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• Anemic Decade
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• ANOVA One way
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• Applications of Artificial Life and Digital Organisms in the Study of Genetic Evolution.
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• Applications Utilizing CRISPR Cas9
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• Architecture of an Open Sourced, Extensible Data Warehouse Builder InterBase 6 Data Warehouse Builder (IB DWB).
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• Arithmetic mean
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• Assembly of Single Substance Use Epidemiological Models
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• Autobiographic Verses
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• Autobiographic Verses 1 to 100
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• Autobiographic Verses 101 to 200
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• Autobiographic Verses 201 to 300
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• AutoX
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• Back of the Envelope Guide (A Tutorial) to 10 Intracellular Landscapes.
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• BactClass Simplifying the Use of Machine Learning in Biology and Medicine.
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• Bactome II Analyzing Gene List for Gene Ontology Over Representation.
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• Bactome III OLIgonucleotide Variable Expression Ranker (OLIVER) 1.0, Tool for Identifying Suitable Reference (Invariant) Genes from Large Microarray Datasets.
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• Bactome, I Python in DNA Fingerprinting.
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• Barnard exact test
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• Bartlett's test
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• Beach
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• Being a “Big Brother”
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• BIOADI A Machine Learning Approach to Identify Abbreviations and Definitions in Biological Literature.
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• Biomedical Literature Analysis Current State and Challenges.
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• Black Aromatic Coffee
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• Blue Heelers T Shirt
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• Boschloo’s exact test
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• Brainopy A Biologically Relevant SQLite Based Artificial Neural Network Library.
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• Brunner Munzel test
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• Canopy
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• Catalog of Biological and Biomedical Databases Published in 2013.
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• Cell Modelling and Simulation
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• Certainty of the Orchard
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• Characterization of a Novel Sequence
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• Characterization of Transcriptional Activities
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• Characterization of Transcriptional Activities.
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• ChatGPT (Feb 13 Version) is a Chinese Room
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• Chi Square test
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• Chi square test of independence
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• Churned Limbical Notes
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• Cleansing the Hidden
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• Coconut Seed
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• Codon Usage Bias and Peptide Properties of Pseudomonas balearica DSM 6083T.
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• Codon Usage Bias is Evolutionarily Conserved.
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• Coffee as a Potential Nutraceutical.
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• Colin in Lost
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• Compendium of Distributions, I Beta, Binomial, Chi Square, F, Gamma, Geometric, Poisson, Student's t, and Uniform.
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• Computational and Statistical Tools for Research
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• Computational and Statistical Tools for Research Annotated Publications
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• Conserved Expression of Natural Antisense Transcripts in Mammals.
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• Consistency Between Saccharomyces cerevisiae S288C Genome Scale Models (iND750 and iMM904)
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• COPADS III (Compendium of Distributions II) Cauchy, Cosine, Exponential, Hypergeometric, Logarithmic, Semicircular, Triangular, and Weibull.
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• COPADS IV Fixed Time Step ODE Solvers for a System of Equations Implemented as a Set of Python Functions.
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• COPADS V Lindenmayer System with Stochastic and Function Based Rules.
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• COPADS VI Fixed Time Step ODE Solvers with Mixed ODE and non ODE Function, and Script Generator.
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• COPADS, I Distances Measures between Two Lists or Sets.
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• COPADS, II Chi Square test, F Test and t Test Routines from Gopal Kanji's 100 Statistical Tests.
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• Core Genome of Deinococcota Phylum from 72 Strains Across 40 Species Consist of Only One Gene, Beta Subunit of DNA Directed RNA Polymerase
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• Core Genome of Poales, An Economically Important Order of Monocotyledons.
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• Core Pseudomonas Genome From 10 Pseudomonas Species.
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• Correlation Analysis on Transcriptomes from Published Human Skin Studies Show Variations between Control Samples.
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• Correlation and Variation Based Method for Reference Genes Identification from Large Datasets.
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• Countdown at Budi's
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• Course Development
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• Cramer’s V
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• Cramér von Mises test
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• Cressie Read power divergence test
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• Cyber Laboratory Notebook for Biologists and Bioinformaticists (CyNote)
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• Data Set Downloads
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• De Novo Origination of Bacillus subtilis 168 Promoters from Random Sequences.
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• De Novo Putative Protein Domains from Random Peptides.
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• Decisions
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• Degradation
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• Development of a Basic Chemistry Conversational Corpus
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• Digital Organism Simulation Environment (DOSE) A Library for Ecologically Based In Silico Experimental Evolution.
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• Digital Organism Simulation Environment (DOSE) Version 1.0.4.
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• DOSSIER A Toolkit to Extract Data from Digital Life Simulations Using Dose.
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• Draft Implementation of a Method to Secure Data by File Fragmentation.
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• Dropping the K
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• Drug Availability is the Most Important Factor in Controlling Substance Abuse
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• Dual Purpose Lightship
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• Eagle's Cry
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• Ebony Wand
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• Electronic Laboratory Notebook on Web2Py Framework.
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• End of Supported Years
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• Enjoyment Spending
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• Enterobacteriaceae
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• Epps Singleton test
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• Escherichia coli ATCC 8739 Adapts Specifically to Sodium Chloride, Monosodium Glutamate, and Benzoic Acid after Prolonged Stress.
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• Escherichia coli ATCC 8739 Adapts to the Presence of Sodium Chloride, Monosodium Glutamate, and Benzoic Acid after Extended Culture.
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• Ethan Baby at Reunion
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• Expectations
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• Experience the Moment
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• Experimenting the Unexperimentable with Digital Organisms
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• Explaining Monod in Terms of Escherichia coli Metabolism.
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• Extending MapMan Ontology to Tobacco for Visualization of Gene Expression.
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• Farming Life
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• Filtering Microarray Correlations by Statistical Literature Analysis Yields Potential Hypotheses for Lactation Research.
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• Financial Stability Day
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• Firebird Database Backup by Serialized Database Table Dump.
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• FIREd at Level 1R
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• First Motar Shot, and On going
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• Fisher exact test
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• Fisher's combined probability test
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• Five Years of Maciej
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• Fligner Killeen test
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• Flow
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• Fly At The Speed Of Light
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• Four Ab Initio Whole Cell Kinetic Models of Bacillus subtilis 168 (bsuLL25) 6051 HGW (bshSM25), N33 (bsuN33SS25), FUA2231 (bsuGR25)
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• Freeman Tukey test
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• Frozen Joy
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• G test
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• G test of independence
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• Garden of Abundant Harvest
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• Gene Co Expressions Cannot Predict Protein Protein Interactions in Escherichia coli.
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• Gene Ontology and KEGG Orthology Mappings for 10 Strains of Pseudomonas stutzeri.
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• Genome Scale Metabolic Model Based Reactome Phenome Map of Synechocystis sp. PCC 6803, A Potential Biofuel Producer.
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• Geometric mean
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• Glucan biosynthesis protein G (mdoG) is a Suitable Reference Gene in Escherichia coli K 12.
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• Goodbye, Josh
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• Gradual and Step wise Halophilization Enables Escherichia coli ATCC 8739 to Adapt to 11% NaCl.
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• Grand Challenges in Bioinformatics Education and Training
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• Grandfather Died
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• Greatest Teacher
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• Grounding Myself
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• Half Life Ago
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• Harmonic mean
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• Harvest
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• High Expression Stability of Microtubule Affinity Regulating Kinase 3 (MARK3) Makes It a Reliable Reference Gene.
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• How Life Can Be Annotated Publications
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• How Life Can Be The alternate world of artificial lives and intelligences
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• How Life Works Annotated publications
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• How life works The rules of biological life on earth
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• Humidity Kills
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• Humpty Dumpty, Why
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• Hundredfold
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• Hypergraph Database Management System (HygDAS)
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• Identification of Reference Genes by Meta Microarray Analyses.
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• In 48 Hours
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• Inconsistent Phylogenetic Trees from Nucleotide or Amino Acid Sequences from Mammalian Mitochondrial Genomes.
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• Independent Genic Encoded Enzymatic Reactions May Randomly Link into Multi Step Biochemical Pathways in the Absence of Large Cell Selective Pressure
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• Installation and Documentation Evaluation of Recent (01 January 2020 to 15 February 2021) Chatbot Engines from Python Package Index (PyPI).
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• Integration of Standardized Cloning Methodologies and Sequence Handling to Support Synthetic Biology Studies.
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• Island A Simple Forward Simulation Tool for Population Genetics.
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• Jarque Bera test
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• Joy of Lion
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• Kendall's tau
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• Kinetic Models with Default Enzyme Kinetics from Genome scale Models.
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• Kolmogorov Smirnov test
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• Kruskal Wallis H test
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• Kurtosis
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• Kurtosis test
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• L1R to L2
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• Lakshmi Rudraksha
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• Last Week of 45
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• Latte at 10 pm
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• Legal Deposit
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• Legal Deposits
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• Let It End
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• Levels of Consciousness
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• Levene's test
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• Lightship Approaching Destination
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• Lightship's Entree
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• Limitless Library
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• Lost
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• Low Classification Accuracy by Logistic Regression, Support Vector Classifier, and Multi Layer Perceptron, but Not Decision Tree, on Random Attributes from Hadamard Matrix.
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• Lunch With An Old Friend
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• Maha Shivratri 2024
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• Mann Whitney U test
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• Mapping Relational Operations onto Hypergraph Model.
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• March 2025
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• Maximum
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• Maybe A Chapter Closed
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• Melbourne, Maybe Soon
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• Melvin is Back
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• Melvin Mooted
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• Melvin's Wedding
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• Metabolite Overproduction Potential of Saccharomyces cerevisiae S288C Explored Using Its Genome Scale Metabolic Model, iMM904.
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• Minimum
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• Mining Biomedical Literature for Molecular Interactions (Muscorian)
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• Mining Protein Protein Interactions from Published Abstracts with MontyLingua.
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• Miscellaneously Important Stuffs
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• Moment
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• Monday
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• Morning Buzzer
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• Mortgage
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• Mudholkar George method
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• Multilevel Metabolic Modelling Using Ordinary Differential Equations
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• My Academic Genealogy
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• My Refereed Publications Before 2020
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• My Sayings
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• Nature is Abundant
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• Neyman's test of goodness of fit
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• Not a Goal, But a Marker
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• NotaLogger Notarization Code Generator and Logging Service.
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• Novel Populations from Simulated Admixed Populations
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• Nucleotide Sequence Composition
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• Nutrient Availability Impacts Intracellular Metabolic Profiles in Digital Organisms.
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• Odds ratio
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• Ode to Banana
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• ODE Versus Petri Net Implementation of Identical SEIRS Model
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• Of (Biological) Models and Simulations.
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• On the Liveliness of Artificial Life.
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• Once and Only MPH
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• One in a Million
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• One More
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• One Percent of Escherichia coli O157 H7 Peptides May Contain Putative Beta Lactamase Activity.
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• One Third Down the Home Run Track
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• Oneness
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• Ongoing
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• Overlapping Stars
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• Page's L test
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• Parts of Speech Tagger Errors Do Not Necessarily Degrade Accuracy in Extracting Information from Biomedical Text.
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• Pearson's correlation coefficient
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• Pearson's method
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• Pearson’s contingency coefficient
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• Peptide Properties of Saccharomyces arboricola H 6 Suggest Randomness in Chromosomal Organization
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• Phil's Visit
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• PNet A Python Library for Petri Net Modeling and Simulation.
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• Point biserial correlation coefficient
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• Portrait of Science and Education Annotated Publications
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• Portraits of Science and Education
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• Positive Day 1
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• Positive Day 2
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• Positive Day 3
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• Positive Day 4
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• Positive Day 5
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• Possession of Treasured Wine
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• Possibility of Abiotic Genesis of Biochemistry.
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• Potential De Novo Origins of Archaebacterial Glycerol 1 Phosphate Dehydrogenase (G1PDH).
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• Potential Information Processing Differences in Male and Hermaphrodite Neural Networks of Caenorhabditis elegans
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• Predicting Peroxide Value of Peanut Oil using Machine Learning Models
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• Prevalence and Length of Open Reading Frames Vary Across Randomly Generated Sequences of Different Nucleotide Compositions.
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• Professional Portfolio
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• Proteome Diversities Among 19 Archaebacterial Species.
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• Pseudomonas balearica DSM 6083T promoters can potentially originate from random sequences.
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• Public Library
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• Quiet in A Group
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• Ragaraja 1.0 The Genome Interpreter of Digital Organism Simulation Environment (DOSE).
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• Random Sequences May Have Putative Beta Lactamase Properties.
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• RANDOMSEQ Python Command‒line Random Sequence Generator.
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• Rapid Genetic Diversity with Variability between Replicated Digital Organism Simulations and its Implications on Cambrian Explosion.
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• Re construction of Protein Protein Interaction Pathways by Mining Subject Verb Objects Intermediates.
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• Re creating the Philosopher’s Mind Artificial Life from Artificial Intelligence.
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• Refereed Publications and Technical Reports
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• Reference Genes for Measuring mRNA Expression.
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• Rejection and Reclamation
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• Relapse Processes are Important in Modelling Drug Epidemic.
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• Relative risk
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• Research Associates
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• Resistance Maintained in Digital Organisms Despite Guanine Cytosine Based Fitness Cost and Extended De Selection Implications to Microbial Antibiotics Resistance.
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• Resistant Traits in Digital Organisms Do Not Revert Preselection Status despite Extended Deselection Implications to Microbial Antibiotics Resistance.
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• Retirement
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• Returns on Grants Benchmark of Personal R and D Output
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• Russel and Rao Coefficient is a Suitable Substitute for Dice Coefficient in Studying Restriction Mapped Genetic Distances of Escherichia coli.
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• Sage of Inner Fire
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• Sage Powers
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• Same One
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• Sample standard deviation
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• Sample standard error
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• Sample variance
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• Science Education Portraits Duoethnograph of First Generation Bioscience Undergraduates in a Private Education Institute in Singapore
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• Science Education Portraits I Identifying Success Factors of Pre Tertiary Bioinformatics Research Experience from Students’ Perspective.
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• Science Education Portraits II Pre Tertiary and Undergraduate Research Mentors Should Consider Publication as Project Endpoint.
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• Science Education Portraits III Perceived Prevalence of Data Fabrication and or Falsification in Research.
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• Science Education Portraits IV Experiences from a Decade as Informal Career Counsellor can be Summarized as Personopreneurship.
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• Science Education Portraits IX – Reproducibility and Transparency of Systematic Reviews
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• Science Education Portraits V The Scientific Tertiary Education that I had Envisioned.
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• Science Education Portraits VI Anecdotes of Life in Singapore During COVID 19 (February 2020 to September 2020).
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• Science Education Portraits VII Statistical Methods Used in 1081 Papers Published in Year 2020 Across 12 Life Science Journals Under BioMed Central.
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• Science Education Portraits X – Personal Archive of a Scientist
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• Science Education Portraits XI ‐ The Advent of Vibe Coding
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• Secondary School Meetup March 2024
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• SEcured REcorder BOx (SEREBO) Based on Blockchain Technology for Immutable Data Management and Notarization.
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• SEcured REcorder BOx (SEREBO) Version 1.0.
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• Self Evaluation on Mastery Rubrics for Bioinformatics
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• SeqProperties A Python Command Line Tool for Basic Sequence Analysis.
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• Sequence Composition.
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• Setting up your system for bioinformatics (Git and Python)
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• Shapiro Wilk test for normality
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• Shifting Vibration
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• Shitty Ground
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• Signal Peptidase Complex Subunit 1 (SPCS1) and Hydroxyacyl CoA Dehydrogenase Beta Subunit (HADHB) are Suitable Reference Genes in Human Lungs.
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• Significant Differences in Media Components and Predicted Growth Rates of 58 Escherichia coli Genome scale Models.
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• Significant Differences in Nucleotide and Peptide Features Between Chromosomes Suggesting Sequence Non Randomness Across Chromosomes.
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• Sims Drive
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• Simulacra Rendered
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• Simulation of the Real
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• Simulation Suggests that One Off Simple Supplementation from the Wild into Captive Population May Not Increase Captive Genetic Diversity.
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• Simulation Suggests that Repeated Supplementations from the Wild into Captive Population Reduce but Cannot Eliminate Inbreeding
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• SiPy – Bringing Python and R to the End User in a Plugin Extensible System
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• Skew
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• Skew test
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• Soft Tagging of Overlapping High Confidence Gene Mention Variants for Cross Species Full Text Gene Normalization.
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• Somer's D
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• Spearman's rank correlation coefficient
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• Specifying the Behaviour of Python Programs Language and Basic Examples.
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• Splitting Earth
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• Statement of Research Interests
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• Statement of Teaching Philosophy
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• Statistical Recipes in Python
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• Stoa
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• Stop Codon Usage Varies on CDS Length, Nucleotide Compositions, and Peptide Instability in Six Escherichia coli Strains.
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• Stouffer's Z score method
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• Students' Feedback
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• Sudden and Steep Harsh Environment Results in Over Compensation in Digital Organisms.
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• Survey of Antisense Transcription
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• Survey of Antisense Transcription.
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• Surya's Christmas 2017
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• Synchronicity
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• Systematic Review of PubMed Articles Prior to 2023 on Effects of Breakfast on School Performance
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• Systematic Review on the Effects of Food on Mental Health via Gut Microbiome
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• t test 2 samples (independent samples) assuming equal variance
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• t test 2 samples (independent samples) assuming unequal variance
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• t test paired (dependent samples)
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• TAPPS Release 1 Plugin Extensible Platform for Technical Analysis and Applied Statistics.
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• Tea at New Year
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• Teaching Experiences
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• Ten Z test Routines from Gopal Kanji's 100 Statistical Tests.
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• The Balance Un Tipped
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• The Curse and the Blessing
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• The Edge of Pause
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• The Elder Path
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• The Monastic Scholar
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• The Road Behind
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• The Tree
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• The World My Nephew Faces
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• Thieves of Happiness
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• Thirty Years of Farming
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• Tippett’s method
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• Towards Portrait [(Auto) Ethnography, Narrative, and Action Research] of Bioinformatics.
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• Transcriptome Analysis of Spermophilus lateralis and Spermophilus tridecemlineatus Liver Does Not Suggest the Presence of Spermophilus liver specific Reference Genes.
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• Trove like Classifiers for Database Catalog
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• Tschuprow’s T
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• Twenty Year
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• Two Cellular Resource Based Models Linking Growth and Parts Characteristics Aids the Study and Optimization of Synthetic Gene Circuits.
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• Understanding Mouse Lactogenesis by Transcriptomics and Literature Analysis.
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• UniKin1 A Universal, Non Species Specific Whole Cell Kinetic Model.
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• Viability of Escherichia coli ATCC 8739 in Nutrient Broth, Luria Bertani Broth and Brain Heart Infusion over 11 Weeks.
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• Videos on YouTube
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• Where Had We Gone Wrong
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• Why I Tell You This...
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• Wilcoxon rank sum test
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• Wilcoxon signed rank test
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• World of Dreams
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• Zero
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• ZeroOne Building and Enhancing Executing Simulation by Incremental Patches.
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• 一年思牛
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