Page Index - mauriceling/mauriceling.github.io GitHub Wiki
455 page(s) in this GitHub Wiki:
- Home
- Maurice HT Ling
- 1049 Days
- 18 Months
- 18 Months of Uncertainty
- 2020 冬至
- 8000 Days
- 999 Days
- A 5 Year Systematic Review (01 April 2017 to 31 March 2022) on the Causes of Abdominal Obesity
- A 5 Year Systematic Review (2018 to 2022) on The Effectiveness of Mediterranean Diet in Preventing Alzheimer’s Disease
- A Case Study using Mitochondrial Genomes of the Order Diprotodontia (Australasian Marsupials) Suggests that Single Ortholog is Not Sufficient for Phylogeny.
- A Cryptography Method Inspired by Jigsaw Puzzles.
- A genetic algorithm framework grounded in biology.
- A Good Virus
- A Personal Narrative of 6 Pre University Research Projects Over 7 Years (2009 2015) Yielding 19 Manuscripts.
- A Predictor for Predicting Escherichia coli Transcriptome and the Effects of Gene Perturbations.
- A Simulation Study on the Effects of Founding Population Size and Number of Alleles Per Locus on the Observed Population Genetic Profile Implications to Broodstock Management.
- A Simulation Study on the Effects of Media Composition on the Growth Rate of Escherichia coli MG1655 using iAF1260 Model.
- A Systematic Review on the Sufficiency of PubMed and Google Scholar for Biosciences.
- A Systematic Scoping Review on the Current Applications of Environmental DNA (eDNA).
- Abstracts and Other Un Refereed Works
- Adaptation of Escherichia coli ATCC 8739 to 11% NaCl.
- Adaptation of Whole Cell Kinetic Model Template, UniKin1, to Escherichia coli Whole Cell Kinetic Model, ecoJC20.
- AdvanceSyn Toolkit An Open Source Suite for Model Development and Analysis in Biological Engineering.
- Advancing Personalized Medicine through the Application of Whole Exome Sequencing and Big Data Analytics.
- Alexander Govern test
- An Anthological Review of Research Utilizing MontyLingua, a Python Based End to End Text Processor.
- An Artificial Life Simulation Library Based on Genetic Algorithm, 3 Character Genetic Code and Biological Hierarchy.
- Analyzing Transcriptome Phenotype Correlations.
- Anemic Decade
- ANOVA One way
- Applications of Artificial Life and Digital Organisms in the Study of Genetic Evolution.
- Applications Utilizing CRISPR Cas9
- Architecture of an Open Sourced, Extensible Data Warehouse Builder InterBase 6 Data Warehouse Builder (IB DWB).
- Arithmetic mean
- Autobiographic Verses
- AutoX
- Back of the Envelope Guide (A Tutorial) to 10 Intracellular Landscapes.
- BactClass Simplifying the Use of Machine Learning in Biology and Medicine.
- Bactome II Analyzing Gene List for Gene Ontology Over Representation.
- Bactome III OLIgonucleotide Variable Expression Ranker (OLIVER) 1.0, Tool for Identifying Suitable Reference (Invariant) Genes from Large Microarray Datasets.
- Bactome, I Python in DNA Fingerprinting.
- Barnard exact test
- Bartlett's test
- Beach
- Being a “Big Brother”
- BIOADI A Machine Learning Approach to Identify Abbreviations and Definitions in Biological Literature.
- Biomedical Literature Analysis Current State and Challenges.
- Black Aromatic Coffee
- Blue Heelers T Shirt
- Boschloo’s exact test
- Brainopy A Biologically Relevant SQLite Based Artificial Neural Network Library.
- Brunner Munzel test
- Canopy
- Catalog of Biological and Biomedical Databases Published in 2013.
- Characterization of Transcriptional Activities.
- ChatGPT (Feb 13 Version) is a Chinese Room
- Chi Square test
- Chi square test of independence
- Churned Limbical Notes
- Coconut Seed
- Codon Usage Bias and Peptide Properties of Pseudomonas balearica DSM 6083T.
- Codon Usage Bias is Evolutionarily Conserved.
- Coffee as a Potential Nutraceutical.
- Colin in Lost
- Compendium of Distributions, I Beta, Binomial, Chi Square, F, Gamma, Geometric, Poisson, Student's t, and Uniform.
- Computational and Statistical Tools for Research
- Computational and Statistical Tools for Research Annotated Publications
- Conserved Expression of Natural Antisense Transcripts in Mammals.
- Consistency Between Saccharomyces cerevisiae S288C Genome Scale Models (iND750 and iMM904)
- COPADS III (Compendium of Distributions II) Cauchy, Cosine, Exponential, Hypergeometric, Logarithmic, Semicircular, Triangular, and Weibull.
- COPADS IV Fixed Time Step ODE Solvers for a System of Equations Implemented as a Set of Python Functions.
- COPADS V Lindenmayer System with Stochastic and Function Based Rules.
- COPADS VI Fixed Time Step ODE Solvers with Mixed ODE and non ODE Function, and Script Generator.
- COPADS, I Distances Measures between Two Lists or Sets.
- COPADS, II Chi Square test, F Test and t Test Routines from Gopal Kanji's 100 Statistical Tests.
- Core Genome of Poales, An Economically Important Order of Monocotyledons.
- Core Pseudomonas Genome From 10 Pseudomonas Species.
- Correlation Analysis on Transcriptomes from Published Human Skin Studies Show Variations between Control Samples.
- Correlation and Variation Based Method for Reference Genes Identification from Large Datasets.
- Countdown at Budi's
- Course Development
- Cramer’s V
- Cramér von Mises test
- Cressie Read power divergence test
- Cyber Laboratory Notebook for Biologists and Bioinformaticists (CyNote)
- Data Set Downloads
- De Novo Origination of Bacillus subtilis 168 Promoters from Random Sequences.
- De Novo Putative Protein Domains from Random Peptides.
- Development of a Basic Chemistry Conversational Corpus
- Digital Organism Simulation Environment (DOSE) A Library for Ecologically Based In Silico Experimental Evolution.
- Digital Organism Simulation Environment (DOSE) Version 1.0.4.
- DOSSIER A Toolkit to Extract Data from Digital Life Simulations Using Dose.
- Draft Implementation of a Method to Secure Data by File Fragmentation.
- Eagle's Cry
- Ebony Wand
- Electronic Laboratory Notebook on Web2Py Framework.
- End of Supported Years
- Enterobacteriaceae
- Epps Singleton test
- Escherichia coli ATCC 8739 Adapts Specifically to Sodium Chloride, Monosodium Glutamate, and Benzoic Acid after Prolonged Stress.
- Escherichia coli ATCC 8739 Adapts to the Presence of Sodium Chloride, Monosodium Glutamate, and Benzoic Acid after Extended Culture.
- Ethan Baby at Reunion
- Expectations
- Explaining Monod in Terms of Escherichia coli Metabolism.
- Extending MapMan Ontology to Tobacco for Visualization of Gene Expression.
- Filtering Microarray Correlations by Statistical Literature Analysis Yields Potential Hypotheses for Lactation Research.
- Firebird Database Backup by Serialized Database Table Dump.
- First Motar Shot, and On going
- Fisher exact test
- Fisher's combined probability test
- Five Years of Maciej
- Fligner Killeen test
- Flow
- Fly At The Speed Of Light
- Freeman Tukey test
- G test
- G test of independence
- Gene Co Expressions Cannot Predict Protein Protein Interactions in Escherichia coli.
- Gene Ontology and KEGG Orthology Mappings for 10 Strains of Pseudomonas stutzeri.
- Genome Scale Metabolic Model Based Reactome Phenome Map of Synechocystis sp. PCC 6803, A Potential Biofuel Producer.
- Geometric mean
- Glucan biosynthesis protein G (mdoG) is a Suitable Reference Gene in Escherichia coli K 12.
- Goodbye, Josh
- Gradual and Step wise Halophilization Enables Escherichia coli ATCC 8739 to Adapt to 11% NaCl.
- Grandfather Died
- Greatest Teacher
- Grounding Myself
- Half Life Ago
- Harmonic mean
- High Expression Stability of Microtubule Affinity Regulating Kinase 3 (MARK3) Makes It a Reliable Reference Gene.
- How Life Can Be Annotated Publications
- How Life Can Be The alternate world of artificial lives and intelligences
- How Life Works Annotated publications
- How life works The rules of biological life on earth
- Humpty Dumpty, Why
- Hypergraph Database Management System (HygDAS)
- Identification of Reference Genes by Meta Microarray Analyses.
- In 48 Hours
- Inconsistent Phylogenetic Trees from Nucleotide or Amino Acid Sequences from Mammalian Mitochondrial Genomes.
- Installation and Documentation Evaluation of Recent (01 January 2020 to 15 February 2021) Chatbot Engines from Python Package Index (PyPI).
- Integration of Standardized Cloning Methodologies and Sequence Handling to Support Synthetic Biology Studies.
- Island A Simple Forward Simulation Tool for Population Genetics.
- Jarque Bera test
- Joy of Lion
- Kendall's tau
- Kinetic Models with Default Enzyme Kinetics from Genome scale Models.
- Kolmogorov Smirnov test
- Kruskal Wallis H test
- Kurtosis
- Kurtosis test
- Let It End
- Levels of Consciousness
- Levene's test
- Lost
- Low Classification Accuracy by Logistic Regression, Support Vector Classifier, and Multi Layer Perceptron, but Not Decision Tree, on Random Attributes from Hadamard Matrix.
- Lunch With An Old Friend
- Mann Whitney U test
- Mapping Relational Operations onto Hypergraph Model.
- Maximum
- Maybe A Chapter Closed
- Melbourne, Maybe Soon
- Melvin is Back
- Melvin Mooted
- Melvin's Wedding
- Metabolite Overproduction Potential of Saccharomyces cerevisiae S288C Explored Using Its Genome Scale Metabolic Model, iMM904.
- Minimum
- Mining Biomedical Literature for Molecular Interactions (Muscorian)
- Mining Protein Protein Interactions from Published Abstracts with MontyLingua.
- Miscellaneously Important Stuffs
- Moment
- Monday
- Morning Buzzer
- Mortgage
- Mudholkar George method
- My Academic Genealogy
- My Sayings
- Neyman's test of goodness of fit
- NotaLogger Notarization Code Generator and Logging Service.
- Novel Populations from Simulated Admixed Populations
- Nutrient Availability Impacts Intracellular Metabolic Profiles in Digital Organisms.
- Odds ratio
- Of (Biological) Models and Simulations.
- On the Liveliness of Artificial Life.
- One in a Million
- One More
- One Percent of Escherichia coli O157 H7 Peptides May Contain Putative Beta Lactamase Activity.
- Oneness
- Ongoing
- Page's L test
- Parts of Speech Tagger Errors Do Not Necessarily Degrade Accuracy in Extracting Information from Biomedical Text.
- Pearson's correlation coefficient
- Pearson's method
- Pearson’s contingency coefficient
- Peptide Properties of Saccharomyces arboricola H 6 Suggest Randomness in Chromosomal Organization
- Phil's Visit
- PNet A Python Library for Petri Net Modeling and Simulation.
- Point biserial correlation coefficient
- Portrait of Science and Education Annotated Publications
- Portraits of Science and Education
- Positive Day 1
- Positive Day 2
- Positive Day 3
- Positive Day 4
- Positive Day 5
- Possession of Treasured Wine
- Possibility of Abiotic Genesis of Biochemistry.
- Potential De Novo Origins of Archaebacterial Glycerol 1 Phosphate Dehydrogenase (G1PDH).
- Prevalence and Length of Open Reading Frames Vary Across Randomly Generated Sequences of Different Nucleotide Compositions.
- Professional Portfolio
- Proteome Diversities Among 19 Archaebacterial Species.
- Pseudomonas balearica DSM 6083T promoters can potentially originate from random sequences.
- Quiet in A Group
- Ragaraja 1.0 The Genome Interpreter of Digital Organism Simulation Environment (DOSE).
- Random Sequences May Have Putative Beta Lactamase Properties.
- RANDOMSEQ Python Command‒line Random Sequence Generator.
- Rapid Genetic Diversity with Variability between Replicated Digital Organism Simulations and its Implications on Cambrian Explosion.
- Re construction of Protein Protein Interaction Pathways by Mining Subject Verb Objects Intermediates.
- Re creating the Philosopher’s Mind Artificial Life from Artificial Intelligence.
- Refereed Publications and Technical Reports
- Reference Genes for Measuring mRNA Expression.
- Relapse Processes are Important in Modelling Drug Epidemic.
- Relative risk
- Research Associates
- Resistance Maintained in Digital Organisms Despite Guanine Cytosine Based Fitness Cost and Extended De Selection Implications to Microbial Antibiotics Resistance.
- Resistant Traits in Digital Organisms Do Not Revert Preselection Status despite Extended Deselection Implications to Microbial Antibiotics Resistance.
- Retirement
- Returns on Grants Benchmark of Personal R and D Output
- Russel and Rao Coefficient is a Suitable Substitute for Dice Coefficient in Studying Restriction Mapped Genetic Distances of Escherichia coli.
- Same One
- Sample standard deviation
- Sample standard error
- Sample variance
- Science Education Portraits Duoethnograph of First Generation Bioscience Undergraduates in a Private Education Institute in Singapore
- Science Education Portraits I Identifying Success Factors of Pre Tertiary Bioinformatics Research Experience from Students’ Perspective.
- Science Education Portraits II Pre Tertiary and Undergraduate Research Mentors Should Consider Publication as Project Endpoint.
- Science Education Portraits III Perceived Prevalence of Data Fabrication and or Falsification in Research.
- Science Education Portraits IV Experiences from a Decade as Informal Career Counsellor can be Summarized as Personopreneurship.
- Science Education Portraits V The Scientific Tertiary Education that I had Envisioned.
- Science Education Portraits VI Anecdotes of Life in Singapore During COVID 19 (February 2020 to September 2020).
- Science Education Portraits VII Statistical Methods Used in 1081 Papers Published in Year 2020 Across 12 Life Science Journals Under BioMed Central.
- SEcured REcorder BOx (SEREBO) Based on Blockchain Technology for Immutable Data Management and Notarization.
- SEcured REcorder BOx (SEREBO) Version 1.0.
- Self Evaluation on Mastery Rubrics for Bioinformatics
- SeqProperties A Python Command Line Tool for Basic Sequence Analysis.
- Sequence Composition.
- Setting up your system for bioinformatics (Git and Python)
- Shapiro Wilk test for normality
- Shifting Vibration
- Signal Peptidase Complex Subunit 1 (SPCS1) and Hydroxyacyl CoA Dehydrogenase Beta Subunit (HADHB) are Suitable Reference Genes in Human Lungs.
- Significant Differences in Media Components and Predicted Growth Rates of 58 Escherichia coli Genome scale Models.
- Significant Differences in Nucleotide and Peptide Features Between Chromosomes Suggesting Sequence Non Randomness Across Chromosomes.
- Sims Drive
- Simulation Suggests that One Off Simple Supplementation from the Wild into Captive Population May Not Increase Captive Genetic Diversity.
- Skew
- Skew test
- Soft Tagging of Overlapping High Confidence Gene Mention Variants for Cross Species Full Text Gene Normalization.
- Somer's D
- Spearman's rank correlation coefficient
- Specifying the Behaviour of Python Programs Language and Basic Examples.
- Statement of Research Interests
- Statement of Teaching Philosophy
- Statistical Recipes in Python
- Stoa
- Stop Codon Usage Varies on CDS Length, Nucleotide Compositions, and Peptide Instability in Six Escherichia coli Strains.
- Stouffer's Z score method
- Students' Feedback
- Sudden and Steep Harsh Environment Results in Over Compensation in Digital Organisms.
- Survey of Antisense Transcription.
- Surya's Christmas 2017
- Synchronicity
- t test 2 samples (independent samples) assuming equal variance
- t test 2 samples (independent samples) assuming unequal variance
- t test paired (dependent samples)
- TAPPS Release 1 Plugin Extensible Platform for Technical Analysis and Applied Statistics.
- Tea at New Year
- Teaching Experiences
- Ten Z test Routines from Gopal Kanji's 100 Statistical Tests.
- The Balance Un Tipped
- The Road Behind
- The Tree
- The World My Nephew Faces
- Thieves of Happiness
- Tippett’s method
- Towards Portrait [(Auto) Ethnography, Narrative, and Action Research] of Bioinformatics.
- Transcriptome Analysis of Spermophilus lateralis and Spermophilus tridecemlineatus Liver Does Not Suggest the Presence of Spermophilus liver specific Reference Genes.
- Trove like Classifiers for Database Catalog
- Tschuprow’s T
- Two Cellular Resource Based Models Linking Growth and Parts Characteristics Aids the Study and Optimization of Synthetic Gene Circuits.
- Understanding Mouse Lactogenesis by Transcriptomics and Literature Analysis.
- UniKin1 A Universal, Non Species Specific Whole Cell Kinetic Model.
- Viability of Escherichia coli ATCC 8739 in Nutrient Broth, Luria Bertani Broth and Brain Heart Infusion over 11 Weeks.
- Videos on YouTube
- Where Had We Gone Wrong
- Wilcoxon rank sum test
- Wilcoxon signed rank test
- World of Dreams
- Worry Not
- Writing Proposal
- Zero
- ZeroOne Building and Enhancing Executing Simulation by Incremental Patches.
- 三十之后
- 三十路
- 三搭
- 三条鱼
- 不乱之心
- 不惑
- 不系舟
- 世家沦沉
- 乙未中秋
- 九月十八
- 书和咖啡
- 争江山
- 五月
- 人滩
- 人生
- 人生一时
- 人生戏剧
- 人生核味
- 人间百态
- 仰山涛
- 何为
- 你我
- 八问悟空之初
- 六年返回情
- 六日日升
- 六道木
- 冲劲
- 刘老牛
- 十七年
- 十二岁那年
- 千年之隔
- 华姐
- 卤猪脚
- 历练
- 参石
- 双月
- 叔夜
- 合花
- 咖啡
- 咸蛋
- 四十二
- 四十二之愿
- 四老六样
- 因果
- 国清三隐
- 墙上草
- 多串
- 多宝彩串
- 夜静俗声
- 够了吧
- 天热的咖啡
- 失眠
- 失眠夜
- 失联的朋友
- 存钱点滴
- 宝宝吃早餐
- 对饮
- 射雕靖
- 小宝宝
- 小黄牛
- 川流静池
- 平点
- 年关回想
- 庚子疫
- 异乡弟
- 异乡除夕
- 弥陀颂
- 往事反腾
- 德俊的丸
- 心忧
- 悼念牛弟弟
- 戊戌狗年
- 房有蟑螂
- 择串
- 择易
- 持名
- 换籍
- 放下
- 故人
- 文玩
- 新缘再逢
- 无患子
- 日落西海
- 晚风
- 景星回府
- 望壬子
- 木化玉
- 极乐学府
- 林伟忠印
- 枣红籽
- 核桃串
- 桃核串
- 榴莲
- 欢送宇涵
- 此时的娑婆
- 水月
- 沙滩步
- 泡姜
- 润粥
- 燕麦
- 爷爷善举
- 牛弟弟七七
- 牛弟弟三七
- 牛生日
- 犀牛角紫檀
- 生肖之哲
- 盟誓
- 盼猫
- 知己
- 禅莲静榭
- 离合岁月
- 离尘
- 空劫色变
- 端午节
- 等待
- 细雨佛牙寺
- 缘起
- 老友
- 老海石
- 自在
- 自训
- 莲花同住
- 菩提老三样
- 蛋花粥
- 蜜蜡
- 补疫苗
- 见半生照
- 观望
- 论玉
- 论酒
- 证享
- 诗两百
- 诗词颂
- 贵哥结缘
- 赠年糕玉
- 转缘
- 轮回
- 送弟回国
- 配雎鸠
- 重组柏香
- 金丝玉
- 金刚台
- 金庸三世酒
- 铁鼠大雪
- 闭门泪
- 闷热
- 除夕夜
- 随游
- 雨阳雨
- 静坐
- 静态
- 静思
- 风阳
- 饮酒思故友