Page Index - mauriceling/mauriceling.github.io GitHub Wiki

546 page(s) in this GitHub Wiki:

• Home
• Maurice HT Ling
• 1049 Days
• 18 Months
• 18 Months of Uncertainty
• 2020 冬至
• 45 岁了
• 45 岁了 2
• 50 不系
• 8000 Days
• 999 Days
• A 10 Year Systematic Review (1 January 2014 to 1 January 2024) on the Potential Health Benefits of Quinoa
• A 10 Year Systematic Review (2013 to 2022) on Effects of Diet on Migraine
• A 5 Year Systematic Review (01 April 2017 to 31 March 2022) on the Causes of Abdominal Obesity
• A 5 Year Systematic Review (1 November 2019 to 31 October 2023) on the Benefits of the “Miracle Tree” (Moringa oleifera)
• A 5 Year Systematic Review (2018 to 2022) on The Effectiveness of Mediterranean Diet in Preventing Alzheimer’s Disease
• A Better 2024
• A Case Study using Mitochondrial Genomes of the Order Diprotodontia (Australasian Marsupials) Suggests that Single Ortholog is Not Sufficient for Phylogeny.
• A Computational Approach to Understand the Human Thought Process
• A Cryptography Method Inspired by Jigsaw Puzzles.
• A genetic algorithm framework grounded in biology.
• A Good Virus
• A Personal Narrative of 6 Pre University Research Projects Over 7 Years (2009 2015) Yielding 19 Manuscripts.
• A Predictor for Predicting Escherichia coli Transcriptome and the Effects of Gene Perturbations.
• A Simulation Study on the Effects of Founding Population Size and Number of Alleles Per Locus on the Observed Population Genetic Profile Implications to Broodstock Management.
• A Simulation Study on the Effects of Media Composition on the Growth Rate of Escherichia coli MG1655 using iAF1260 Model.
• A Systematic Review (Before 01 February 2024) on the Health Benefits of Kimchi
• A Systematic Review on the Sufficiency of PubMed and Google Scholar for Biosciences.
• A Systematic Scoping Review on the Current Applications of Environmental DNA (eDNA).
• Ab Initio Whole Cell Kinetic Model of Stutzerimonas balearica DSM 6083 (pbmKZJ23)
• Abstracts and Other Un Refereed Works
• Adaptation of Escherichia coli ATCC 8739 to 11% NaCl.
• Adaptation of Whole Cell Kinetic Model Template, UniKin1, to Escherichia coli Whole Cell Kinetic Model, ecoJC20.
• AdvanceSyn Toolkit An Open Source Suite for Model Development and Analysis in Biological Engineering.
• Advancing Personalized Medicine through the Application of Whole Exome Sequencing and Big Data Analytics.
• Alexander Govern test
• An Anthological Review of Research Utilizing MontyLingua, a Python Based End to End Text Processor.
• An Artificial Life Simulation Library Based on Genetic Algorithm, 3 Character Genetic Code and Biological Hierarchy.
• Analyzing Transcriptome Phenotype Correlations.
• Anemic Decade
• ANOVA One way
• Applications of Artificial Life and Digital Organisms in the Study of Genetic Evolution.
• Applications Utilizing CRISPR Cas9
• Architecture of an Open Sourced, Extensible Data Warehouse Builder InterBase 6 Data Warehouse Builder (IB DWB).
• Arithmetic mean
• Assembly of Single Substance Use Epidemiological Models
• Autobiographic Verses
• AutoX
• Back of the Envelope Guide (A Tutorial) to 10 Intracellular Landscapes.
• BactClass Simplifying the Use of Machine Learning in Biology and Medicine.
• Bactome II Analyzing Gene List for Gene Ontology Over Representation.
• Bactome III OLIgonucleotide Variable Expression Ranker (OLIVER) 1.0, Tool for Identifying Suitable Reference (Invariant) Genes from Large Microarray Datasets.
• Bactome, I Python in DNA Fingerprinting.
• Barnard exact test
• Bartlett's test
• Beach
• Being a “Big Brother”
• BIOADI A Machine Learning Approach to Identify Abbreviations and Definitions in Biological Literature.
• Biomedical Literature Analysis Current State and Challenges.
• Black Aromatic Coffee
• Blue Heelers T Shirt
• Boschloo’s exact test
• Brainopy A Biologically Relevant SQLite Based Artificial Neural Network Library.
• Brunner Munzel test
• Canopy
• Catalog of Biological and Biomedical Databases Published in 2013.
• Cell Modelling and Simulation
• Characterization of Transcriptional Activities.
• ChatGPT (Feb 13 Version) is a Chinese Room
• Chi Square test
• Chi square test of independence
• Churned Limbical Notes
• Coconut Seed
• Codon Usage Bias and Peptide Properties of Pseudomonas balearica DSM 6083T.
• Codon Usage Bias is Evolutionarily Conserved.
• Coffee as a Potential Nutraceutical.
• Colin in Lost
• Compendium of Distributions, I Beta, Binomial, Chi Square, F, Gamma, Geometric, Poisson, Student's t, and Uniform.
• Computational and Statistical Tools for Research
• Computational and Statistical Tools for Research Annotated Publications
• Conserved Expression of Natural Antisense Transcripts in Mammals.
• Consistency Between Saccharomyces cerevisiae S288C Genome Scale Models (iND750 and iMM904)
• COPADS III (Compendium of Distributions II) Cauchy, Cosine, Exponential, Hypergeometric, Logarithmic, Semicircular, Triangular, and Weibull.
• COPADS IV Fixed Time Step ODE Solvers for a System of Equations Implemented as a Set of Python Functions.
• COPADS V Lindenmayer System with Stochastic and Function Based Rules.
• COPADS VI Fixed Time Step ODE Solvers with Mixed ODE and non ODE Function, and Script Generator.
• COPADS, I Distances Measures between Two Lists or Sets.
• COPADS, II Chi Square test, F Test and t Test Routines from Gopal Kanji's 100 Statistical Tests.
• Core Genome of Deinococcota Phylum from 72 Strains Across 40 Species Consist of Only One Gene, Beta Subunit of DNA Directed RNA Polymerase
• Core Genome of Poales, An Economically Important Order of Monocotyledons.
• Core Pseudomonas Genome From 10 Pseudomonas Species.
• Correlation Analysis on Transcriptomes from Published Human Skin Studies Show Variations between Control Samples.
• Correlation and Variation Based Method for Reference Genes Identification from Large Datasets.
• Countdown at Budi's
• Course Development
• Cramer’s V
• Cramér von Mises test
• Cressie Read power divergence test
• Cyber Laboratory Notebook for Biologists and Bioinformaticists (CyNote)
• Data Set Downloads
• De Novo Origination of Bacillus subtilis 168 Promoters from Random Sequences.
• De Novo Putative Protein Domains from Random Peptides.
• Decisions
• Degradation
• Development of a Basic Chemistry Conversational Corpus
• Digital Organism Simulation Environment (DOSE) A Library for Ecologically Based In Silico Experimental Evolution.
• Digital Organism Simulation Environment (DOSE) Version 1.0.4.
• DOSSIER A Toolkit to Extract Data from Digital Life Simulations Using Dose.
• Draft Implementation of a Method to Secure Data by File Fragmentation.
• Eagle's Cry
• Ebony Wand
• Electronic Laboratory Notebook on Web2Py Framework.
• End of Supported Years
• Enterobacteriaceae
• Epps Singleton test
• Escherichia coli ATCC 8739 Adapts Specifically to Sodium Chloride, Monosodium Glutamate, and Benzoic Acid after Prolonged Stress.
• Escherichia coli ATCC 8739 Adapts to the Presence of Sodium Chloride, Monosodium Glutamate, and Benzoic Acid after Extended Culture.
• Ethan Baby at Reunion
• Expectations
• Experience the Moment
• Experimenting the Unexperimentable with Digital Organisms
• Explaining Monod in Terms of Escherichia coli Metabolism.
• Extending MapMan Ontology to Tobacco for Visualization of Gene Expression.
• Farming Life
• Filtering Microarray Correlations by Statistical Literature Analysis Yields Potential Hypotheses for Lactation Research.
• Firebird Database Backup by Serialized Database Table Dump.
• First Motar Shot, and On going
• Fisher exact test
• Fisher's combined probability test
• Five Years of Maciej
• Fligner Killeen test
• Flow
• Fly At The Speed Of Light
• Freeman Tukey test
• G test
• G test of independence
• Gene Co Expressions Cannot Predict Protein Protein Interactions in Escherichia coli.
• Gene Ontology and KEGG Orthology Mappings for 10 Strains of Pseudomonas stutzeri.
• Genome Scale Metabolic Model Based Reactome Phenome Map of Synechocystis sp. PCC 6803, A Potential Biofuel Producer.
• Geometric mean
• Glucan biosynthesis protein G (mdoG) is a Suitable Reference Gene in Escherichia coli K 12.
• Goodbye, Josh
• Gradual and Step wise Halophilization Enables Escherichia coli ATCC 8739 to Adapt to 11% NaCl.
• Grand Challenges in Bioinformatics Education and Training
• Grandfather Died
• Greatest Teacher
• Grounding Myself
• Half Life Ago
• Harmonic mean
• High Expression Stability of Microtubule Affinity Regulating Kinase 3 (MARK3) Makes It a Reliable Reference Gene.
• How Life Can Be Annotated Publications
• How Life Can Be The alternate world of artificial lives and intelligences
• How Life Works Annotated publications
• How life works The rules of biological life on earth
• Humidity Kills
• Humpty Dumpty, Why
• Hypergraph Database Management System (HygDAS)
• Identification of Reference Genes by Meta Microarray Analyses.
• In 48 Hours
• Inconsistent Phylogenetic Trees from Nucleotide or Amino Acid Sequences from Mammalian Mitochondrial Genomes.
• Independent Genic Encoded Enzymatic Reactions May Randomly Link into Multi Step Biochemical Pathways in the Absence of Large Cell Selective Pressure
• Installation and Documentation Evaluation of Recent (01 January 2020 to 15 February 2021) Chatbot Engines from Python Package Index (PyPI).
• Integration of Standardized Cloning Methodologies and Sequence Handling to Support Synthetic Biology Studies.
• Island A Simple Forward Simulation Tool for Population Genetics.
• Jarque Bera test
• Joy of Lion
• Kendall's tau
• Kinetic Models with Default Enzyme Kinetics from Genome scale Models.
• Kolmogorov Smirnov test
• Kruskal Wallis H test
• Kurtosis
• Kurtosis test
• Lakshmi Rudraksha
• Latte at 10 pm
• Let It End
• Levels of Consciousness
• Levene's test
• Limitless Library
• Lost
• Low Classification Accuracy by Logistic Regression, Support Vector Classifier, and Multi Layer Perceptron, but Not Decision Tree, on Random Attributes from Hadamard Matrix.
• Lunch With An Old Friend
• Maha Shivratri 2024
• Mann Whitney U test
• Mapping Relational Operations onto Hypergraph Model.
• Maximum
• Maybe A Chapter Closed
• Melbourne, Maybe Soon
• Melvin is Back
• Melvin Mooted
• Melvin's Wedding
• Metabolite Overproduction Potential of Saccharomyces cerevisiae S288C Explored Using Its Genome Scale Metabolic Model, iMM904.
• Minimum
• Mining Biomedical Literature for Molecular Interactions (Muscorian)
• Mining Protein Protein Interactions from Published Abstracts with MontyLingua.
• Miscellaneously Important Stuffs
• Moment
• Monday
• Morning Buzzer
• Mortgage
• Mudholkar George method
• Multilevel Metabolic Modelling Using Ordinary Differential Equations
• My Academic Genealogy
• My Sayings
• Neyman's test of goodness of fit
• NotaLogger Notarization Code Generator and Logging Service.
• Novel Populations from Simulated Admixed Populations
• Nutrient Availability Impacts Intracellular Metabolic Profiles in Digital Organisms.
• Odds ratio
• Ode to Banana
• ODE Versus Petri Net Implementation of Identical SEIRS Model
• Of (Biological) Models and Simulations.
• On the Liveliness of Artificial Life.
• One in a Million
• One More
• One Percent of Escherichia coli O157 H7 Peptides May Contain Putative Beta Lactamase Activity.
• Oneness
• Ongoing
• Overlapping Stars
• Page's L test
• Parts of Speech Tagger Errors Do Not Necessarily Degrade Accuracy in Extracting Information from Biomedical Text.
• Pearson's correlation coefficient
• Pearson's method
• Pearson’s contingency coefficient
• Peptide Properties of Saccharomyces arboricola H 6 Suggest Randomness in Chromosomal Organization
• Phil's Visit
• PNet A Python Library for Petri Net Modeling and Simulation.
• Point biserial correlation coefficient
• Portrait of Science and Education Annotated Publications
• Portraits of Science and Education
• Positive Day 1
• Positive Day 2
• Positive Day 3
• Positive Day 4
• Positive Day 5
• Possession of Treasured Wine
• Possibility of Abiotic Genesis of Biochemistry.
• Potential De Novo Origins of Archaebacterial Glycerol 1 Phosphate Dehydrogenase (G1PDH).
• Potential Information Processing Differences in Male and Hermaphrodite Neural Networks of Caenorhabditis elegans
• Predicting Peroxide Value of Peanut Oil using Machine Learning Models
• Prevalence and Length of Open Reading Frames Vary Across Randomly Generated Sequences of Different Nucleotide Compositions.
• Professional Portfolio
• Proteome Diversities Among 19 Archaebacterial Species.
• Pseudomonas balearica DSM 6083T promoters can potentially originate from random sequences.
• Public Library
• Quiet in A Group
• Ragaraja 1.0 The Genome Interpreter of Digital Organism Simulation Environment (DOSE).
• Random Sequences May Have Putative Beta Lactamase Properties.
• RANDOMSEQ Python Command‒line Random Sequence Generator.
• Rapid Genetic Diversity with Variability between Replicated Digital Organism Simulations and its Implications on Cambrian Explosion.
• Re construction of Protein Protein Interaction Pathways by Mining Subject Verb Objects Intermediates.
• Re creating the Philosopher’s Mind Artificial Life from Artificial Intelligence.
• Refereed Publications and Technical Reports
• Reference Genes for Measuring mRNA Expression.
• Rejection and Reclamation
• Relapse Processes are Important in Modelling Drug Epidemic.
• Relative risk
• Research Associates
• Resistance Maintained in Digital Organisms Despite Guanine Cytosine Based Fitness Cost and Extended De Selection Implications to Microbial Antibiotics Resistance.
• Resistant Traits in Digital Organisms Do Not Revert Preselection Status despite Extended Deselection Implications to Microbial Antibiotics Resistance.
• Retirement
• Returns on Grants Benchmark of Personal R and D Output
• Russel and Rao Coefficient is a Suitable Substitute for Dice Coefficient in Studying Restriction Mapped Genetic Distances of Escherichia coli.
• Sage Powers
• Same One
• Sample standard deviation
• Sample standard error
• Sample variance
• Science Education Portraits Duoethnograph of First Generation Bioscience Undergraduates in a Private Education Institute in Singapore
• Science Education Portraits I Identifying Success Factors of Pre Tertiary Bioinformatics Research Experience from Students’ Perspective.
• Science Education Portraits II Pre Tertiary and Undergraduate Research Mentors Should Consider Publication as Project Endpoint.
• Science Education Portraits III Perceived Prevalence of Data Fabrication and or Falsification in Research.
• Science Education Portraits IV Experiences from a Decade as Informal Career Counsellor can be Summarized as Personopreneurship.
• Science Education Portraits IX – Reproducibility and Transparency of Systematic Reviews
• Science Education Portraits V The Scientific Tertiary Education that I had Envisioned.
• Science Education Portraits VI Anecdotes of Life in Singapore During COVID 19 (February 2020 to September 2020).
• Science Education Portraits VII Statistical Methods Used in 1081 Papers Published in Year 2020 Across 12 Life Science Journals Under BioMed Central.
• Secondary School Meetup March 2024
• SEcured REcorder BOx (SEREBO) Based on Blockchain Technology for Immutable Data Management and Notarization.
• SEcured REcorder BOx (SEREBO) Version 1.0.
• Self Evaluation on Mastery Rubrics for Bioinformatics
• SeqProperties A Python Command Line Tool for Basic Sequence Analysis.
• Sequence Composition.
• Setting up your system for bioinformatics (Git and Python)
• Shapiro Wilk test for normality
• Shifting Vibration
• Shitty Ground
• Signal Peptidase Complex Subunit 1 (SPCS1) and Hydroxyacyl CoA Dehydrogenase Beta Subunit (HADHB) are Suitable Reference Genes in Human Lungs.
• Significant Differences in Media Components and Predicted Growth Rates of 58 Escherichia coli Genome scale Models.
• Significant Differences in Nucleotide and Peptide Features Between Chromosomes Suggesting Sequence Non Randomness Across Chromosomes.
• Sims Drive
• Simulation of the Real
• Simulation Suggests that One Off Simple Supplementation from the Wild into Captive Population May Not Increase Captive Genetic Diversity.
• Simulation Suggests that Repeated Supplementations from the Wild into Captive Population Reduce but Cannot Eliminate Inbreeding
• Skew
• Skew test
• Soft Tagging of Overlapping High Confidence Gene Mention Variants for Cross Species Full Text Gene Normalization.
• Somer's D
• Spearman's rank correlation coefficient
• Specifying the Behaviour of Python Programs Language and Basic Examples.
• Statement of Research Interests
• Statement of Teaching Philosophy
• Statistical Recipes in Python
• Stoa
• Stop Codon Usage Varies on CDS Length, Nucleotide Compositions, and Peptide Instability in Six Escherichia coli Strains.
• Stouffer's Z score method
• Students' Feedback
• Sudden and Steep Harsh Environment Results in Over Compensation in Digital Organisms.
• Survey of Antisense Transcription.
• Surya's Christmas 2017
• Synchronicity
• Systematic Review of PubMed Articles Prior to 2023 on Effects of Breakfast on School Performance
• Systematic Review on the Effects of Food on Mental Health via Gut Microbiome
• t test 2 samples (independent samples) assuming equal variance
• t test 2 samples (independent samples) assuming unequal variance
• t test paired (dependent samples)
• TAPPS Release 1 Plugin Extensible Platform for Technical Analysis and Applied Statistics.
• Tea at New Year
• Teaching Experiences
• Ten Z test Routines from Gopal Kanji's 100 Statistical Tests.
• The Balance Un Tipped
• The Road Behind
• The Tree
• The World My Nephew Faces
• Thieves of Happiness
• Thirty Years of Farming
• Tippett’s method
• Towards Portrait [(Auto) Ethnography, Narrative, and Action Research] of Bioinformatics.
• Transcriptome Analysis of Spermophilus lateralis and Spermophilus tridecemlineatus Liver Does Not Suggest the Presence of Spermophilus liver specific Reference Genes.
• Trove like Classifiers for Database Catalog
• Tschuprow’s T
• Twenty Year
• Two Cellular Resource Based Models Linking Growth and Parts Characteristics Aids the Study and Optimization of Synthetic Gene Circuits.
• Understanding Mouse Lactogenesis by Transcriptomics and Literature Analysis.
• UniKin1 A Universal, Non Species Specific Whole Cell Kinetic Model.
• Viability of Escherichia coli ATCC 8739 in Nutrient Broth, Luria Bertani Broth and Brain Heart Infusion over 11 Weeks.
• Videos on YouTube
• Where Had We Gone Wrong
• Wilcoxon rank sum test
• Wilcoxon signed rank test
• World of Dreams
• Worry Not
• Writing Proposal
• Zero
• ZeroOne Building and Enhancing Executing Simulation by Incremental Patches.
• 一年思牛
• 一年思牛2
• 万众一心
• 三军待命
• 三十之后
• 三十路
• 三搭
• 三条鱼
• 不乱之心
• 不惑
• 不系舟
• 世家沦沉
• 中秋御花园
• 乙未中秋
• 九月十八
• 书和咖啡
• 乾财道
• 争江山
• 五月
• 人滩
• 人生
• 人生一时
• 人生何意
• 人生戏剧
• 人生核味
• 人生自旅
• 人间百态
• 仰山涛
• 何为
• 你我
• 八问悟空之初
• 六一醉翁
• 六年返回情
• 六日日升
• 六道木
• 军符
• 冲劲
• 凤眼中串
• 刘老牛
• 十七年
• 十二岁那年
• 千年之隔
• 半退休愿
• 华姐
• 卤猪脚
• 卸下名利
• 历练
• 参石
• 双月
• 叔夜
• 吃
• 吃包触感
• 合花
• 咖啡
• 咸蛋
• 唐僧肉
• 善恶
• 四十二
• 四十二之愿
• 四十五岁庆生
• 四十五岁庆生2
• 四十五的窘迫
• 四老六样
• 因果
• 国清三隐
• 图书馆
• 墙上草
• 多串
• 多宝彩串
• 夜静俗声
• 够了吧
• 天热的咖啡
• 失眠
• 失眠夜
• 失联的朋友
• 存钱点滴
• 宝宝吃早餐
• 对饮
• 射雕靖
• 小宝宝
• 小黄牛
• 川流静池
• 平点
• 年关回想
• 庚子疫
• 异乡弟
• 异乡除夕
• 弥陀颂
• 往事反腾
• 德俊的丸
• 心忧
• 悼念牛弟弟
• 戊戌狗年
• 房有蟑螂
• 择串
• 择易
• 持名
• 换籍
• 放下
• 故人
• 文玩
• 文青日
• 新缘再逢
• 无患子
• 无生法
• 无电邮的早上
• 日落西海
• 晚风
• 晨雨
• 景星回府
• 望壬子
• 木化玉
• 极乐学府
• 林伟忠印
• 枣红籽
• 核桃串
• 桃核串
• 梦机械白蛇
• 榴莲
• 欢送宇涵
• 此时的娑婆
• 死灰之木
• 水月
• 沙滩步
• 泡姜
• 活在半
• 润粥
• 清明 2024
• 湿婆舞
• 燕麦
• 爷爷善举
• 牛弟弟七七
• 牛弟弟三七
• 牛弟弟百日
• 牛生日
• 犀牛角紫檀
• 生肖之哲
• 白桥度水火
• 盟誓
• 盼猫
• 知己
• 碧螺春
• 禅莲静榭
• 离合岁月
• 离尘
• 空劫色变
• 端午节
• 等待
• 细雨佛牙寺
• 绝魂丹
• 缘起
• 美好的一天
• 老友
• 老海石
• 自在
• 自训
• 莲花同住
• 菠菜三蛋
• 菩提老三样
• 虚己以游世
• 蛋花粥
• 蜜蜡
• 补疫苗
• 见半生照
• 观望
• 论玉
• 论酒
• 证享
• 诈降的蟑螂
• 诗两百
• 诗词颂
• 该往
• 贵哥结缘
• 赠年糕玉
• 跑步为了吃
• 转缘
• 轮回
• 送弟回国
• 配雎鸠
• 重组柏香
• 金丝玉
• 金刚台
• 金庸三世酒
• 铁罗汉
• 铁观音
• 铁鼠大雪
• 闭门泪
• 闷热
• 阅六一居士传
• 阅秋声赋
• 除夕夜
• 随游
• 雨阳雨
• 静坐
• 静态
• 静思
• 风阳
• 饮酒思故友
• 香蕉
• 香蕉麦
• 麻辣锅
• 黄汤引伤