Page Index - galizia-lab/pyview GitHub Wiki

146 page(s) in this GitHub Wiki:

• Home
• Welcome to the repository containing the python implementation of PyView
• Contents
• home
• Welcome to the repository containing the python implementation of VIEW
• Contents
• About log files
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• Artifact Correction Flags
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• Background Flags
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• Batch analysis: movies
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• Batch analysis: tapestries
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• Batch analysis: traces
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• Components of ILTIS window
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• Components of VIEW window
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• Creating a custom CTV
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• Creating a python environment
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• Creating measurement lists
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• Data organization and preparation
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• Define experiment : create a list file
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• Define experimental settings: create a .yml file
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• Developer Guide
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• Download and configure test data
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• Download and register test data
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• FAQ
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• FAQs about viewing tapestries
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• Flags usage
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• Generating Movies
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• Generating Overviews
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• Generating Traces
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• Getting Started
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• Glossary
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• GUI guides
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• Guide to accessing flags
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• Guide to adding a filter to raw data pre processing
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• Guide to adding new experiment setups
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• Guide to adding new flags
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• Guide to adding new signal calculation methods
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• Guide to creating tapestries
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• Guide to exporting movies
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• Guide to exporting processed data to MAT file
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• Guide to exporting traces
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• Guide to movement correction
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• Hands on Tutorial with synthetic data
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• How to add modules for segmentation to VIEW
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• How to load data in VIEW and calculate signals
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• ILTIS: ROIs and traces
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• Install anaconda
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• Installation and updating
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• Introduction
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• List of Movement Correction plugins and their parameters
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• Loading data flags
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• Loading data in PyView GUI
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• Movie flags
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• Movie gallery
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• Output structure
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• Overview flags
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• Overview gallery
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• Paths Flags
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• Philosophy of the program
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• Preparing your computer for communication with the Gitlab Repository of Uni Konstanz
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• Reading exported MAT files
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• Recommended folder structure
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• Report generation flags
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• Run PyView: getting started
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• Run PyView: load data using YML file
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• Signal calculation Flags
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• Specifying stimulus on off times
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• System flags
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• Tapestry Configuration file
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• Transfer Data to ILTIS
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• Tutorial
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• Unit Testing
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• User Manual
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• Using CTVs
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• What happens during signal calculation?
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• YML files and how to use them
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