Paths Flags - galizia-lab/pyview GitHub Wiki

List of Flags

STG_MotherOfAllFolders STG_Datapath STG_OdorInfoPath STG_OdormaskPath
STG_OdorReportPath STG_TempArchivePath STG_ProcessedDataPath

STG_MotherOfAllFolders

What does it do?

This flags indicates the project directory for data analysis

What values can it take?

String values containing the full path of the project directory

Are values expected to be in specific units?

No.

Special Notes

None

STG_Datapath

What does it do?

This flags indicates folder containing raw data

What values can it take?

A string value containing either the full path of the directory or it's path relative to STG_MotherOfAllFolders

Are values expected to be in specific units?

No.

Special Notes

None

STG_OdorInfoPath

What does it do?

This flags indicates the folder for measurement list files

What values can it take?

A string value containing either the full path of the directory or it's path relative to STG_MotherOfAllFolders

Are values expected to be in specific units?

No.

Special Notes

None

STG_OdormaskPath

What does it do?

This flags indicates the folder containing the rois and masks for the project.

What values can it take?

A string value containing either the full path of the directory or it's path relative to STG_MotherOfAllFolders

Are values expected to be in specific units?

No.

Special Notes

None

STG_OdorReportPath

What does it do?

This flags indicates the folder where VIEW writes its outputs (movies/tapestries/GloDataMix csvs)

What values can it take?

A string value containing either the full path of the directory.

Are values expected to be in specific units?

No.

Special Notes

None

STG_TempArchivePath

What does it do?

This flags indicates the folder where VIEW writes data generated intermediately when running analysis pipelines.

What values can it take?

A string value containing the full path of a directory. When this flag is not set or when it points to a non-existent path (e.g.: "None"), an internal path will be used. This is the directory returned by the function "user_data_dir" of "appdirs" (readme) with application name "VIEW" and application author "UKN-Neuro".

Are values expected to be in specific units?

No.

Special Notes

None

STG_ProcessedDataPath

What does it do?

This flags indicates the folder where VIEW writes processed data, i.e, movement corrected raw data as well as spatial footprints and temporal traces of finalized pipelines.

What values can it take?

A string value containing either the full path of the directory or it's path relative to STG_MotherOfAllFolders

Are values expected to be in specific units?

No.

Special Notes

None