Components of VIEW window - galizia-lab/pyview GitHub Wiki

Let’s have a look at the components of the VIEW window now:

  • green Information about the setup used (here you can select, for this tutorial, synthetic data 665, 667, 676)
  • red Information about how signals were calculated (here: deltaF/F, value for LE_CalcMethod is 3)
  • blue Information about the .yml file loaded
  • purple Options for quickly loading new measurements
  • orange List of measurements that have been loaded (that are in memory). Single lines can be selected, all data can be deleted, or single measurements can be deleted.
  • yellow Log window reporting about events/calculations/errors. (Please check also the terminal window for error reports from python).

More about the VIEW window:

  • blue Flag settings. Here, you can look up each flag setting, search for flags, change flags. There is a direct hyperlink to the PyView Wiki page. And there is a button allowing to overwrite the current .yml file with the values selected here. Flags are sorted into different categories (Filters, Output, LoadData etc.)
  • red Close all matplotlib figures: with data analysis, sometimes many windows clutter the screen. Close them all in one click!
  • green Generate overviews of the measurement selected in Data Manager (orange square), using the flags selected (blue square), the most important flags are repeated here (CTV_Method etc. ). Once your flags are set, click “Generate(new)”
  • purple Generate traces of the measurements (using .roi file)
  • yellow Save a movie file for the measurement selected in Data Manager (orange square).
  • sky-blue Show a foto of the raw data (generally an averaged frame).
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Run PyView -> load data using YML file Contents Transfer Data to ILTIS