Flags usage - galizia-lab/pyview GitHub Wiki

This resource provides a detailed information about flags and their usage

Developmental versions might have minor changes in what the flags do. Please consult this internal csv file for the most up-to-date information.

System

VIEW_batchmode SO_MV_colortable

Background frames

LE_StartBackground LE_PrestimEndBackground LE_DefaultBackgroundRange LE_StimulusBasedBackground

Artifact Correction of Raw Data

LE_BleachCorrMethod LE_BleachCutBorder LE_BleachExcludeArea LE_BleachExcludeStimulus
LE_BleachStartFrame LELog_ExcludeSeconds LELog_InitialFactor
LE_ScatteredLightFactor LE_ScatteredLightRadius
Data_Median_Filter Data_Median_Filter_space Data_Median_Filter_time
Data_Mean_Filter Data_Mean_Filter_space Data_Mean_Filter_time Data_ReplaceInitFrames

Loading Raw Data

LE_labelColumns LE_loadExp

Calculating Signals:

LE_CalcMethod

Paths

STG_MotherOfAllFolders STG_Datapath STG_OdorInfoPath STG_OdormaskPath
STG_OdorReportPath STG_TempArchivePath STG_ProcessedDataPath

Report Generation Flags

CTV_scalebar CTV_firstframe CTV_lastframe CTV_Method
CTV_MethodFile Signal_FilterSpaceFlag Signal_FilterSpaceSize Signal_FilterTimeFlag
Signal_FilterTimeSize SO_MV_scalemin SO_MV_scalemax RM_Radius
RM_ROITrace RM_ROIThreshold

Overview

SO_bgColor SO_cutborder SO_fgColor SO_fontName
SO_indiScale SO_indiScale3factor SO_individualScale SO_lowerThreshPositiveResps
SO_Method SO_percentileScale SO_percentileValue SO_reverseIt
SO_rotateImage SO_scaleLegendFactor SO_showROIs SO_thresholdOn
SO_thresholdOnValue SO_thresholdScale SO_thresholdShowImage SO_upperThreshNegativeResps
SO_withinArea SO_withinMask SO_xgap

Movie

mv_bgColor mv_bitrate mv_correctStimulusOnset mv_cutborder
mv_displayTime mv_exportFormat mv_fgColor mv_FirstFrame
mv_fontName mv_indiScale3factor mv_individualScale mv_LastFrame
mv_lowerThreshPositiveResps mv_markStimulus mv_minimumBrightness mv_morphoThreshold
mv_percentileScale mv_percentileValue mv_reverseIt mv_rotateImage
mv_scaleLegendFactor mv_SpeedFactor mv_suppressMilliseconds mv_thresholdOn
mv_thresholdOnValue mv_thresholdScale mv_thresholdShowImage mv_upperThreshNegativeResps
mv_withinArea mv_withinMask mv_xgap mv_ygap