Define experiment : create a list file - galizia-lab/pyview GitHub Wiki
An example for a measurement list file is given in the file Synthetic_data_strip.lst.xls in the folder synthetic_data/02_LISTS (also shown below).
| Measu | Analyze | Animal | Comment | Cycle | DBB1 | Label | Line | OConc | Odour | StimON | StimOFF | setting |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | Constructed_00 | raw666 | 200.0 | noFile | raw666_00 | constructed | -10 | NEG-10 | 25 | 35 | setting |
| 2 | 1 | Constructed_00 | raw666 | 200.0 | noFile | raw666_01 | constructed | -1 | NEG-1 | 25 | 35 | setting |
| 3 | 1 | Constructed_00 | raw666 | 200.0 | noFile | raw666_02 | constructed | 0 | NOISE | 25 | 35 | setting |
| 4 | 1 | Constructed_00 | raw666 | 200.0 | noFile | raw666_03 | constructed | 0.5 | POS+0.5 | 25 | 35 | setting |
| 5 | 1 | Constructed_00 | raw666 | 200.0 | noFile | raw666_04 | constructed | 1 | POS+1 | 25 | 35 | setting |
| 6 | 1 | Constructed_00 | raw666 | 200.0 | noFile | raw666_05 | constructed | 2 | POS+2 | 25 | 35 | setting |
| 7 | 1 | Constructed_00 | raw666 | 200.0 | noFile | raw666_06 | constructed | 5 | POS+5 | 25 | 35 | setting |
| 8 | 1 | Constructed_00 | raw666 | 200.0 | noFile | raw666_07 | constructed | 10 | POS+10 | 25 | 35 | setting |
| 9 | 1 | Constructed_00 | raw666 | 200.0 | noFile | raw666_08 | constructed | 20 | POS+20 | 25 | 35 | setting |
This mimics 9 measurements (lines) in a single animal (file). Each measurements has a unique value for “measu”, which is used to select that measurement. Columns include a label for the animal, cycle (this is ms for each frame), DBB1 (location of the file with the data, in the case of synthetic data no file), OConc (concentration of the stimulus – in this particular case used to create fictive responses of different size and polarity), Odour (nature of the stimulus), StimON-StimOFF (given here as frame numbers).
The file view/flags_and_metadata_definitions/metadata_definition.csv in the repository contains all possible column names that are used in
PyView. This includes information about more complex stimulus timing settings, treatments with pharmacological substances, absolute time of
measurement, time of measurement relative to beginning of the experiment, size of pixels, age or sex of the animal, and many more.
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