Page Index - BUNPC/Homer3 GitHub Wiki
149 page(s) in this GitHub Wiki:
- Home
- Quick links
- Overview
- Adding auxiliary measurements in the .nirs files
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- Adding or Editing stimulus marks
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- App Settings
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- Changing Group
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- Choosing a processing stream config file
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- Contributing to Homer3 and its submodules
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- Converting Artinis files to .nirs files
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- Converting Hitachi files to .nirs files
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- Converting NIRx files to .nirs files
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- Converting Shimadzu files to .nirs files
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- Copying Plots to Figure
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- Creating your own processing stream
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- Directory structure and data file organization
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- Displaying P values
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- Download and Installation
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- Excluding or Deleting stimulus marks
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- Exporting HRF data
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- Features of MainGUI
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- Getting started with Homer3
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- hmrG_SubjAvg
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- hmrG_SubjAvgStd
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- hmrR_BandpassFilt
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- hmrR_BlockAvg
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- hmrR_GLM
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- hmrR_Intensity2OD
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- hmrR_MotionArtifact
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- hmrR_MotionArtifactByChannel
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- hmrR_MotionCorrectCbsi
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- hmrR_MotionCorrectPCA
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- hmrR_MotionCorrectPCArecurse
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- hmrR_MotionCorrectRLOESS
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- hmrR_MotionCorrectSpline
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- hmrR_MotionCorrectSplineSG
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- hmrR_MotionCorrectWavelet
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- hmrR_OD2Conc
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- hmrR_PCAFilter
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- hmrR_PruneChannels
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- hmrR_StimRejection
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- hmrR_tCCA
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- hmrS_CalcPvalue
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- hmrS_RunAvg
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- hmrS_RunAvgStd
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- Homer
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- HOMER3 file formats
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- Homer3 User Interfaces
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- Input and Output Names and Formats
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- Input Files
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- Installing and updating Homer3 with Git or GitHub Desktop
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- Loading and Editing processing stream
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- Loading Dataset and Converting Format
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- Manually Excluding Channels
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- Manually Excluding Data
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- Output Files
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- Processing Functions
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- Processing Streams
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- Rename Conditions
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- Reset Dataset
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- Running Processing Stream
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- Selecting Current Processing
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- Setting processing stream parameters
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- SNIRF data file format
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- Standalone SNIRF loading and saving
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- Starting StimEditGUI
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- Tutorial Videos (HOMER2)
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- Typical processing streams
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- User Data Table
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- User Function Definitions and the Processing Stream
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- Using homer functions offline
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- Viewing HRF in Probe Space
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- Viewing HRF Standard Error
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- Viewing Processed Data
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- Viewing Raw Data before Processing
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- Working With Datasets using DataTree Library
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