Page Index - BUNPC/Homer3 GitHub Wiki
76 page(s) in this GitHub Wiki:
- Home
- Quick links
- Overview
- Adding auxiliary measurements in the .nirs files
- Adding or Editing stimulus marks
- App Settings
- Changing Group
- Choosing a processing stream config file
- Contributing to Homer3 and its submodules
- Converting Artinis files to .nirs files
- Converting Hitachi files to .nirs files
- Converting NIRx files to .nirs files
- Converting Shimadzu files to .nirs files
- Copying Plots to Figure
- Creating your own processing stream
- Directory structure and data file organization
- Displaying P values
- Download and Installation
- Excluding or Deleting stimulus marks
- Exporting HRF data
- Features of MainGUI
- Getting started with Homer3
- hmrG_SubjAvg
- hmrG_SubjAvgStd
- hmrR_BandpassFilt
- hmrR_BlockAvg
- hmrR_GLM
- hmrR_Intensity2OD
- hmrR_MotionArtifact
- hmrR_MotionArtifactByChannel
- hmrR_MotionCorrectCbsi
- hmrR_MotionCorrectPCA
- hmrR_MotionCorrectPCArecurse
- hmrR_MotionCorrectRLOESS
- hmrR_MotionCorrectSpline
- hmrR_MotionCorrectSplineSG
- hmrR_MotionCorrectWavelet
- hmrR_OD2Conc
- hmrR_PCAFilter
- hmrR_PruneChannels
- hmrR_StimRejection
- hmrR_tCCA
- hmrS_CalcPvalue
- hmrS_RunAvg
- hmrS_RunAvgStd
- Homer
- HOMER3 file formats
- Homer3 User Interfaces
- Input and Output Names and Formats
- Input Files
- Installing and updating Homer3 with Git or GitHub Desktop
- Loading and Editing processing stream
- Loading Dataset and Converting Format
- Manually Excluding Channels
- Manually Excluding Data
- Output Files
- Processing Functions
- Processing Streams
- Rename Conditions
- Reset Dataset
- Running Processing Stream
- Selecting Current Processing
- Setting processing stream parameters
- SNIRF data file format
- Standalone SNIRF loading and saving
- Starting StimEditGUI
- Tutorial Videos (HOMER2)
- Typical processing streams
- User Data Table
- User Function Definitions and the Processing Stream
- Using homer functions offline
- Viewing HRF in Probe Space
- Viewing HRF Standard Error
- Viewing Processed Data
- Viewing Raw Data before Processing
- Working With Datasets using DataTree Library