Page Index - nih-cfde/published-documentation GitHub Wiki

145 page(s) in this GitHub Wiki:

• Home
• What is the C2M2?
• How does the CFDE Data Submission System work?
• Building a datapackage
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• C2M2 Table Summary
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• How to approve or reject a submission
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• How to approve your datapackage
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• How to review a datapackage
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• How to submit a datapackage
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• Information about access_url
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• Offboarding from the CFDE Portal Submission System
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• Onboarding to the CFDE Portal Submission System
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• Quickstart
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• Reference Tables
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• submission prep script
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• Tableinfo: analysis_type.tsv
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• TableInfo: anatomy.tsv
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• TableInfo: assay_type.tsv
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• TableInfo: biofluid.tsv
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• TableInfo: biosample.tsv
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• TableInfo: biosample_disease.tsv
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• TableInfo: biosample_from_subject.tsv
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• TableInfo: biosample_gene.tsv
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• TableInfo: biosample_in_collection.tsv
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• TableInfo: biosample_ptm.tsv
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• TableInfo: biosample_substance.tsv
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• TableInfo: collection.tsv
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• TableInfo: collection_anatomy.tsv
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• TableInfo: collection_biofluid.tsv
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• TableInfo: collection_compound.tsv
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• TableInfo: collection_defined_by_project.tsv
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• Tableinfo: collection_disease.tsv
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• TableInfo: collection_gene.tsv
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• TableInfo: collection_in_collection.tsv
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• Tableinfo: collection_phenotype.tsv
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• TableInfo: collection_protein.tsv
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• TableInfo: collection_ptm.tsv
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• TableInfo: collection_substance.tsv
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• TableInfo: collection_taxonomy.tsv
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• TableInfo: compound.tsv
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• TableInfo: data_type.tsv
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• TableInfo: dcc.tsv
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• TableInfo: disease.tsv
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• TableInfo: domain_location.tsv
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• TableInfo: file.tsv
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• TableInfo: file_describes_biosample.tsv
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• TableInfo: file_describes_collection.tsv
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• TableInfo: file_describes_subject.tsv
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• TableInfo: file_format.tsv
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• TableInfo: file_in_collection.tsv
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• TableInfo: gene.tsv
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• TableInfo: id_namespace.tsv
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• TableInfo: ncbi_taxonomy.tsv
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• Tableinfo: phenotype.tsv
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• Tableinfo: phenotype_disease.tsv
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• Tableinfo: phenotype_gene.tsv
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• TableInfo: project.tsv
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• TableInfo: project_in_project.tsv
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• TableInfo: protein.tsv
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• TableInfo: protein_gene.tsv
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• TableInfo: ptm.tsv
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• TableInfo: ptm_subtype.tsv
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• TableInfo: ptm_type.tsv
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• TableInfo: sample_prep_method.tsv
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• TableInfo: subject.tsv
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• TableInfo: subject_disease.tsv
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• TableInfo: subject_granularity.tsv
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• TableInfo: subject_in_collection.tsv
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• Tableinfo: subject_phenotype.tsv
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• TableInfo: subject_race.tsv
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• TableInfo: subject_role.tsv
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• TableInfo: subject_role_taxonomy.tsv
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• TableInfo: subject_substance.tsv
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• TableInfo: substance.tsv
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