Tableinfo: collection_phenotype.tsv - nih-cfde/published-documentation GitHub Wiki

Association between a collection and a Human Phenotype Ontology term

Each row in this table is equivalent to the statement "the contents of collection X directly relate to the study of phenotype Y", for one particular (collection X, phenotype Y) pair.

All fields are required: this table can be empty (header-row only), but any non-header rows must leave no fields blank.

Some examples:

• If you don't have any collections associated with phenotypes, this table should be left empty.
• If you have exactly one phenotype associated with each of your collections, this table will have as many rows as collection.tsv.
• If you have five phenotypes associated with each collection, this table will have five times as many rows as collection.tsv.
• If some but not all of your collections are associated with one or more phenotypes, this table will contain one row for each phenotype assigned to each such collection (and the resulting row count will not have any obvious relationship to the number of rows in collection.tsv, which is both expected and fine in such a case).

Field	Field Description	Required?	Field Value Type	Extra Info
collection_id_namespace	Identifier namespace for this collection	Required	string	This will be the value of id_namespace in the row in collection.tsv corresponding to the collection referenced in this row. If your program has not registered multiple CFDE identifier namespaces, this will be exactly the same value for all rows.
collection_local_id	The ID of this collection	Required	string	This will be the value of local_id in the row in collection.tsv corresponding to the collection referenced in this row.
phenotype	A valid Human Phenotype Ontology term	Required	string	Human Phenotype Ontology lookup Examples: HP:0000349, HP:0012425