TableInfo: protein.tsv - nih-cfde/published-documentation GitHub Wiki

This table must not be manually created. Users should skip this, and all other tables marked "Built by script" in this summary, preparing only the rest of their datapackage's TSV files (those marked "Prepared by submitter") for submission. Once the "Prepared by submitter" tables are ready, users should then use the C2M2 submission prep script to automatically proteinrate this table (and the other "Built by script" tables) using the information in the "Prepared by submitter" tables.

The protein.tsv table will have as many rows as the number of unique UniProt terms appearing in the protein column of biosample_protein.tsv and collection_protein

Field	Field Description	Required?	Field Value Type	Extra Info
id	A UniProt Knowledgebase (UniProtKB) protein accession (AC)	Required	string	Example: Q6GZX4
name	The UniProt entry name (formerly "ID") of this protein	Required	string	Example: 001R_FRG3G
description	A description of this protein	Optional	string
synonyms	A list of alternate names for this protein	Optional	array
organism	OPTIONAL: An NCBI Taxonomy Database ID identifying this protein's source organism (e.g. 'NCBI:txid9606')	string