TableInfo: gene.tsv - nih-cfde/published-documentation GitHub Wiki

This table must not be manually created. Users should skip this, and all other tables marked "Built by script" in this summary, preparing only the rest of their datapackage's TSV files (those marked "Prepared by submitter") for submission. Once the "Prepared by submitter" tables are ready, users should then use the C2M2 submission prep script to automatically generate this table (and the other "Built by script" tables) using the information in the "Prepared by submitter" tables.

The gene.tsv table will have as many rows as the number of unique Emsembl terms appearing in the gene column of biosample_gene.tsv.

Field	Field Description	Required?	Field Value Type	Extra Info
id	An Ensembl gene ID	Required	string	Example: ENSG00000010404
name	The Ensembl 'Name' for this gene (e.g. 'BRCA1')	Required	string
description	The Ensembl 'Description' of this gene (e.g. 'BRCA1 DNA repair associated'	Optional	string
synonyms	A list of Ensembl 'Gene synonyms' for this gene (e.g. ['BRCC1', 'FANCS', 'PPP1R53', 'RNF53'])	Optional	array
organism	An NCBI Taxonomy Database ID identifying this gene's source organism (e.g. 'NCBItxid9606'	string