Page Index - cerr/CERR GitHub Wiki
98 page(s) in this GitHub Wiki:
- Home
- Installing
- Sample Datasets
- Community/Support
- Tutorials
- access scan and label mask from planC
- Auto Segmentation models
- Benchmarking CERR Radiomics with other software
- Building a deeplabv3 segmentation model
- Building AI Models with CERR
- CERR Extractor: Fusing DVH data with outcomes
- CERROptions (user defined settings)
- CoLlAGe
- Command line tools
- Comparison with Pyradiomics
- Compiled version of CERR
- Consensus Structure
- Contouring (using reference series)
- Contouring tools
- Convert the output of calcGlobalRadiomicsFeatures.m to analyzable matrix format
- Coordinate system
- Crosslisting functions
- Data Structure (The planC object)
- Data structure for IMRTP
- DCE MR Analysis
- Deformable Image Registration (DIR)
- Deploying AI models
- Deriving New Structure
- Directory Structure
- dose volume histograms
- Dosimetric models
- DVH metrics in CERR
- Editing Dose
- Editing Scans
- Editing Structures
- example to obtain scan values within an roi for the patient cohort
- example wrapper_function_for_radiomics_calculation
- Extracting radiomics features for a patient cohort
- First order (intensity) features
- First order statistics
- Gabor filter
- GLCM_global_features
- Global radiomics feature calculation parameters
- GLRLM_global_features
- GLSZM_global_features
- Haralick texture features
- Harmonizing structure names across a cohort
- Higher order radiomics features
- Histogram based scan metrics
- Image preprocessing for deep learning based segmentation
- Image Resampling
- Importing Mha
- Importing NIfTI data
- Importing to CERR
- Importing vendor specific data
- IMRT optimization interfacing with an external solver
- IMRTP GUI controls
- Intensity volume histogram (IVH) features
- Interfacing IMRT optimization with an external solver
- JSON configuration for deep learning based segmentation
- JSON settings for ROE
- JSON settings for ROE (criteria)
- JSON settings for ROE (models)
- JSON settings for ROE (protocols)
- Laplacian of Gaussian filter
- Laws' textures
- Mean filter
- Measuring Background Parenchymal Enhancement (BPE) on MRI
- Merging plans
- NGLDM_global_features
- NGTDM_global_features
- Non model based analysis of DCE MRI
- Optimal Mass Transport (OMT) distance
- ORART Optimization example
- Patch wise first order statistics
- Peak and valley features
- Plan Robustness Analysis
- Pre processing directories for batch import
- Preprocessing settings for scans
- Quantize scan matrix
- Radiomics
- Radiomics models
- Radiomics test suite
- Radiotherapy Outcomes Estimator (ROE)
- Reassigning Structure Color
- ROE architcture
- Running Singularity with Vagrant
- Segment Labeler
- Segmentation evaluation metrics
- Shape features
- sliCERR Extension for 3DSlicer
- Sobel filter
- Source code version of CERR
- Texture calculation
- Using ROE
- Using SimpleITK filters
- Viewer
- Wavelet filter