Harmonizing structure names across a cohort - cerr/CERR GitHub Wiki

We provide a graphical interface to map structure and dose labels to a standard list, across a cohort of CERR-format files.

The CERR+ tool

  • Run structureNameMapGUI from the Matlab command window to launch the renaming tool.

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  • Provide the path to the CERR archives to be edited.

  • Specify the desired structure labels as a pipe-separated list:
    str1_name| str2_name| str3_name

  • Select "Start scan".

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  • On the "Match Names" tab, map the available structures to the desired label.

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  • Review your changes under the "Results" tab and write the harmonized files to disk.

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Example

For statistical modelling of radiotherapy outcomes