Page Index - Valdes-Tresanco-MS/AMDock-win GitHub Wiki
24 page(s) in this GitHub Wiki:
- Home
- 1. INTRODUCTION
- 1.1 Cite AMDock
- 2. DOWNLOAD AND INSTALLATION
- 3. AMDock WORKFLOW and GUI
- 4. TUTORIALS
- 4.2 Simple docking
- 4.2.1 Custom box with Autodock4Zn
- 4.2.2 Box centered on Hetero using Autodock Vina
- 4.2.2.1 re Docking experiment
- 4.2.2.2 Docking a similar ligand
- 4.2.3 Centered on residue(s) using AutoDock Vina
- 4.2.4 Automatic mode using AutoDock Vina
- 4.3 Off target docking
- 4.4 Scoring
- 4.5 Additional Tutorials
- 4.5.1 In unity, strength...
- 4.5.2 Docking to allosteric binding sites...
- 4.5.3 Input a customized AD4 parameter file
- 5. APPENDIX
- 5.1 Change Box specifications on AMDock PyMol plugin
- 5.2 Making a high quality image for publications
- 5.3 Analysing stored results
- Table Of Contents