4. TUTORIALS - Valdes-Tresanco-MS/AMDock-win GitHub Wiki

4.1 Before beginning...

Here we describe how AMDock can be used to predict the protein-ligand complex structure from the coordinates of receptor and ligand separately. We are interested in showing only the AMDock procedure. Thus, we avoid discussions about the advantages and disadvantages of docking programs. We used one or another program for docking purposes at our convenience as well as structure files used in previous tutorials. All information about these programs can be reviewed in their respective manuals and original publications. Reading AMDock WORKFLOW and GUI section is encouraged before starting the tutorials.