Page Index - neurohub/neurohub_documentation GitHub Wiki
92 page(s) in this GitHub Wiki:
- Home
- Welcome to the NeuroHub Wiki
- Table of Contents
- 1. Getting started
- 2. Using NeuroHub
- 3. Examples
- 4. Supplementary Information
- 5. Direct access to the UK Biobank data
- 6. NeuroHub and Machine Learning
- 7. Acknowledging NeuroHub
- 1.0.Getting started
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- 1.1.Get a NeuroHub account
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- 1.2.UKBiobank Access Request
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- 2.0.Using NeuroHub
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- 2.1.Available Tools and Datasets
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- 2.10.Accessing the ABCD dataset
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- 2.11.Accessing the OpenNeuro dataset
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- 2.2.Access NeuroHub
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- 2.3.Creating a project
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- 2.4.LORIS Data Query Tool (DQT)
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- 2.5.Jupyter Notebooks
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- 2.6.Messaging in NeuroHub
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- 2.7.Accessing the Canadian Open Neuroscience Platform (CONP) datasets
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- 2.8.Accessing the HCP (Human Connectome Project) datasets
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- 2.9.Accessing the UK Biobank dataset
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- 3.0.Examples
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- 3.1.Example 1 (Analyses of structural data)
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- 4.0.Supplementary Information
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- 5.0.Direct access to the UK Biobank data
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- 5.1.Available Data
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- 5.2.An example of extracting ICD codes from UK Biobank tabular data
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- 5.3.Accessing Imaging Data
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- 5.4.Processing Data directly on Beluga
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- 6.0.NeuroHub and Machine Learning
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- 7.0.Acknowledging NeuroHub
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- BraTSPipeline
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- Cellranger Count
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- Civet outputs
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- CIVET QC
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- Configure a private data provider
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- HCP Aging
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- How to Transfer files
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- NIST MNI minipipeline
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- OpenNeuro dataset name is 'not valid' scenario
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- scRNAbox
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- Step by step process
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- TractoFlow UKBiobank process
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- UK Biobank fMRIPrep outputs
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- Upload files
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- Upload files all at once with SFTP server
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- Upload files one by one
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