Page Index - neurohub/neurohub_documentation GitHub Wiki

51 page(s) in this GitHub Wiki:

• Home
• Welcome to the NeuroHub Wiki
• Table of Contents
• 1. Getting started
• 2. Using NeuroHub
• 3. Examples
• 4. Supplementary Information
• 5. Direct access to the UK Biobank data
• 6. NeuroHub and Machine Learning
• 7. Acknowledging NeuroHub
• 1.0.Getting started
• 1.1.Get a NeuroHub account
• 1.2.UKBiobank Access Request
• 2.0.Using NeuroHub
• 2.1.Available Tools and Datasets
• 2.10.Accessing the ABCD dataset
• 2.11.Accessing the OpenNeuro dataset
• 2.2.Access NeuroHub
• 2.3.Creating a project
• 2.4.LORIS Data Query Tool (DQT)
• 2.5.Jupyter Notebooks
• 2.6.Messaging in NeuroHub
• 2.7.Accessing the Canadian Open Neuroscience Platform (CONP) datasets
• 2.8.Accessing the HCP (Human Connectome Project) datasets
• 2.9.Accessing the UK Biobank dataset
• 3.0.Examples
• 3.1.Example 1 (Analyses of structural data)
• 4.0.Supplementary Information
• 5.0.Direct access to the UK Biobank data
• 5.1.Available Data
• 5.2.An example of extracting ICD codes from UK Biobank tabular data
• 5.3.Accessing Imaging Data
• 5.4.Processing Data directly on Beluga
• 6.0.NeuroHub and Machine Learning
• 7.0.Acknowledging NeuroHub
• BraTSPipeline
• Cellranger Count
• Civet outputs
• CIVET QC
• Configure a private data provider
• HCP Aging
• How to Transfer files
• NIST MNI minipipeline
• OpenNeuro dataset name is 'not valid' scenario
• scRNAbox
• Step by step process
• TractoFlow UKBiobank process
• UK Biobank fMRIPrep outputs
• Upload files
• Upload files all at once with SFTP server
• Upload files one by one