Page Index - bokulich-lab/q2-annotate GitHub Wiki
149 page(s) in this GitHub Wiki:
- Home
- MOSHPIT
- Components
- Installation
- Issues
- bin‐contigs‐metabat
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- BrackenDB
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- build‐custom‐diamond‐db
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- build‐eggnog‐diamond‐db
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- build‐kraken‐db
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- classify‐kaiju
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- classify‐kraken2
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- collate‐annotations
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- collate‐feature‐data‐mags
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- collate‐orthologs
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- collate‐sample‐data‐mags
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- dereplicate‐mags
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- DistanceMatrix
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- EggnogHmmerIdmap
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- eggnog‐annotate
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- eggnog‐diamond‐search
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- eggnog‐hmmer‐search
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- estimate‐bracken
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- evaluate‐busco
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- FeatureData[Kraken2Outputs]
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- FeatureData[Kraken2Reports]
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- FeatureData[MAG]
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- FeatureData[NOG]
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- FeatureData[ProteinSequence]
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- FeatureData[Sequence]
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- FeatureData[Taxonomy]
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- FeatureTable[Frequency]
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- FeatureTable[PresenceAbsence]
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- fetch‐busco‐db
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- fetch‐diamond‐db
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- fetch‐eggnog‐db
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- fetch‐eggnog‐hmmer‐db
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- fetch‐eggnog‐proteins
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- fetch‐kaiju‐db
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- fetch‐ncbi‐taxonomy
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- Functional Annotation of MAGs (or Contigs)
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- Generate MAGs from Reads
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- GenomeData[Genes]
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- GenomeData[Loci]
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- GenomeData[Proteins]
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- Importing and Exporting Data into Qiime2
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- inspect‐kraken2‐db
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- KaijuDB
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- Kraken2DB
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- Kraken2DBReport
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- kraken2‐to‐features
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- kraken2‐to‐mag‐features
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- MAG Quality Control
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- partition‐feature‐data‐mags
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- partition‐orthologs
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- partition‐sample‐data‐mags
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- Predict Genes from MAGs
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- predict‐genes‐prodigal
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- ProfileHMM[MultipleProtein]
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- ProfileHMM[PressedProtein]
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- qiime tools citations
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- ReferenceDB[BuscoDB]
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- ReferenceDB[Diamond]
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- ReferenceDB[Eggnog]
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- ReferenceDB[EggnogProteinSequences]
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- ReferenceDB[NCBITaxonomy]
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- SampleData[BLAST6]
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- SampleData[Contigs]
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- SampleData[Kraken2Outputs]
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- SampleData[Kraken2Reports]
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- SampleData[MAGs]
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- SampleData[PairedEndSequencesWithQuality]
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- SampleData[SequencesWithQuality]
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- what_to_do
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- 🎬 Actions
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- 🔠 Semantic Types
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- 🧑🏻🏫 Tutorials
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