ReferenceDB[EggnogProteinSequences] - bokulich-lab/q2-annotate GitHub Wiki

eggNOG protein database.

Artifact Format

class EggnogProteinSequencesDirFmt(model.DirectoryFormat):
    taxid_info = model.File("e5.taxid_info.tsv", format=EggnogRefTextFileFmt)
    proteins = model.File(
        "e5.proteomes.faa", format=MixedCaseProteinFASTAFormat
    )

Expected Folder Structure

data
├── e5.taxid_info.tsv
└── e5.proteomes.faa

Where to find ReferenceDB[EggnogProteinSequences]

As Output

• fetch-eggnog-proteins

As Input

• build-eggnog-diamond-db

Relevant Resources

• eggNOG web page