dereplicate‐mags - bokulich-lab/q2-annotate GitHub Wiki

This method dereplicates MAGs from multiple samples using distances between them found in the provided distance matrix. For each cluster of similar MAGs, the longest one will be selected as the representative.

For the full description of the action's inputs, outputs, and parameters run qiime moshpit dereplicate‐mags --help in the terminal.

Inputs

• mags (SampleData[MAGs]): MAGs to be dereplicated.
• distance_matrix (DistanceMatrix): Matrix of distances between MAGs.

Outputs

• dereplicated_mags (FeatureData[MAG]): Dereplicated MAGs.
• feature_table (FeatureTable[PresenceAbsence]): Mapping between MAGs and samples.

Example Use

qiime moshpit dereplicate‐mags \
   --i-mags mags.qza \
   --i-distance_matrix distance_mat.qza \
   --o-dereplicated_mags mags_dereplicated.qza \
   --o-feature_table table.qza \
   --verbose