GenomeData[Genes] - bokulich-lab/q2-annotate GitHub Wiki

Collection of genomic fasta files in multiple FASTA format.

Artifact Format

class GenesDirectoryFormat(model.DirectoryFormat):
    genes = model.FileCollection(r'(.*\_)?genes[0-9]*\.(fa|fna|fasta)$',
                                 format=DNAFASTAFormat)

    @genes.set_path_maker
    def genes_path_maker(self, genome_id):
        return '%s_genes.fasta' % genome_id

Expected Folder Structure

data
├── <some_ID_or_folder>genes<some_number>.fasta
⋮
└── <some_ID_or_folder>genes<some_number>.fasta

Where to find GenomeData[Genes]

• Predict genes from MAGs tutorial.
• Actions in q2-moshpit that have this semantic type:

As Output

• qiime moshpit predict-genes-prodigal