eggnog‐annotate - bokulich-lab/q2-annotate GitHub Wiki

Annotate hits using the eggNOG annotation database.

For the full description of the action's inputs, outputs, and parameters run qiime moshpit eggnog‐annotate --help in the terminal.

Inputs

• eggnog-hits (SampleData[BLAST6]): Predicted hits (obtained from the eggnog‐diamond‐search action).
• eggnog-db (ReferenceDB[Eggnog]): eggNOG annotation database (obtained from the fetch‐eggnog‐db action).

Outputs

• ortholog-annotations (FeatureData[NOG]): Annotated hits.

Example Use

qiime moshpit eggnog-annotate \
   --i-eggnog-hits hits.qza \
   --i-eggnog-db eggnog_db.qza \
   --o-ortholog-annotations annotations.qza \
   --verbose

Tutorials

List of tutorials that involve this action.

• Functional Annotation of MAGs (or Contigs)

Links to Relevant Resources

• eggNOG webpage

Citation

@article{key0,
 author = {Huerta-Cepas, Jaime and Szklarczyk, Damian and Heller, Davide and Hernández-Plaza, Ana and Forslund, Sofia K and Cook, Helen and Mende, Daniel R and Letunic, Ivica and Rattei, Thomas and Jensen, Lars J and von Mering, Christian and Bork, Peer},
 doi = {10.1093/nar/gky1085},
 issn = {0305-1048},
 journal = {Nucleic Acids Research},
 month = {January},
 number = {D1},
 pages = {D309--D314},
 shorttitle = {eggNOG 5.0},
 title = {eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses},
 url = {https://doi.org/10.1093/nar/gky1085},
 urldate = {2024-01-18},
 volume = {47},
 year = {2019}
}