fetch‐ncbi‐taxonomy - bokulich-lab/q2-annotate GitHub Wiki

Downloads NCBI reference taxonomy from the NCBI FTP server and saves it to an artifact.

• At least 30 GB of free storage space is required to run this action.
• For the full description of the action's inputs, outputs and parameters run qiime moshpit fetch-eggnog-proteins --help in the terminal.

Inputs

No inputs are needed for this action.

Outputs

• taxonomy (ReferenceDB[NCBITaxonomy]): NCBI reference taxonomy.

Example Use

qiime moshpit fetch-ncbi-taxonomy \
   --o-taxonomy taxonomy.qza
   --verbose

Tutorials

List of tutorials that involve this action.

• Functional Annotation of MAGs (or Contigs)

Links to Relevant Resources

• NCBI FTP server

Citation

@misc{key0,
 note = {Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information;},
 title = {National Center for Biotechnology Information (NCBI)},
 url = {https://www.ncbi.nlm.nih.gov/}
}