ReferenceDB[Eggnog] - bokulich-lab/q2-annotate GitHub Wiki

eggNOG annotation database.

Artifact Format

class EggnogRefDirFmt(model.DirectoryFormat):
    eggnog = model.FileCollection(r'eggnog.*db.*',
                                  format=EggnogRefBinFileFmt)

    @eggnog.set_path_maker
    def eggnog_path_maker(self, name):
        return str(name)

Expected Folder Structure

data
├── eggnog.db
├── eggnog.taxa.db
├── eggnog.taxa.tar.gz
├── eggnog.taxa.db.traverse.pkl
└── eggnog_proteins.dmnd.gz

Where to find ReferenceDB[Eggnog]

As Output

• fetch-eggnog-db

As Input

• eggnog-annotate

Relevant Resources

• eggNOG web page