Page Index - aechchiki/SIB_LongReadsWorkshop_Zurich17 GitHub Wiki
93 page(s) in this GitHub Wiki:
- Home
- Long Reads Workshop
- Table of content
- Acknowledgements
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- Align the experimental transcripts to the reference genome
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- Anchoring contigs and scaffolds using linkage maps
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- Anchoring contigs scaffolds using linkage maps
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- Assembly canu
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- Assembly miniasm
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- Assessing quality of genome assembly
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- Assessing quality of transcriptome assembly
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- Biological material
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- canu_command
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- Checkpoint: genome assembly answers
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- Checkpoint: genome assemnly
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- Checkpoint: Post assembly steps
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- Checkpoint: reads extraction
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- Checkpoint: sequencers
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- Checkpoint: sequencers answers
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- Checkpoint: Transcriptome
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- Checkpoint: transcriptome assembly
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- Choice of assembler
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- Compare the experiemental transcripts to the reference annotation
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- Comparison to the reference transcriptome
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- completeness metrics
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- contamination
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- continuity metrics
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- Contributors
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- Experimental design
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- File organization
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- Genome assembly
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- Introduction
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- Learning objectives
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- MinION HDF: fast5
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- MinION: error correcting 2D reads with Canu
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- Oxford Nanopore Technologies: MinION
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- PacBio HDF: h5
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- PacBio: the Iso Seq pipeline
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- Pacific Biosciences: RSII
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- polishing
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- Post assembly steps
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- Practical Information
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- Read extraction
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- reference based metrics
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- Run docker image
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- Schedule
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- Transcriptome assembly: introduction
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- Unix: useful tips
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