Page Index - ababaian/serratus GitHub Wiki
74 page(s) in this GitHub Wiki:
- Home
- .summary Reports
- Access Data Release
- Achaeavirus
- ambivirus_extended_data
- Apocryptovirus
- Architecture and Pipeline
- Assembly benchmark results for 8 coronavirus candidates datasets
- Assembly Data
- budget
- Camaroon gut
- Containers
- Cov phylogenetic tree quality by monophylicity
- Creating taxon specific slices of the Pfam HMM database
- Darwin
- Data Policy
- deltavirus
- Design of nucleotide summarizer scoring and depth estimates
- DIAMOND nr
- Experimental References
- Find_novel_viruses
- Find_novel_viruses_A_serratus.io
- Find_novel_viruses_B_palmdb
- Find_novel_viruses_C_microassembly
- Find_novel_viruses_C_novel_cov
- Find_novel_viruses_E_viromic
- Finding transfer recombination events in the Spike protein
- FLOM reference
- Fr4NK
- Hierarchical OTU classification of RdRPs
- Kenya Virome
- Manuscript Style Guide
- Metagenomic Co Assembly Proof of Concept
- Motifator, a new tool for classifiying RdRPs and close homologs
- palmID: rubivirus and rubi like virus data
- pangenome_design
- PRICE de novo assembly
- Project plan for big RdRp search
- Proteome guided assembly for high divergence low coverage genomes
- RdRP OTU system
- RdRp trimming with hacked usearch v12
- ref_cov3ma
- ref_protref5
- ref_rdrp1
- Referenced software
- RNA Deep Virome Assemblage
- Running a Treesearch
- Running an Experiment
- Running Serratus
- Seeking digital artist to help crowdfund Serratus
- Sequence References
- Serratus Annotation
- Serratus Assembly
- Serratus Examplars
- Serratus Explorer
- Serratus Lite
- Serratus SQL Database Management
- Serratus Website
- SerratusSQL
- SerratusSQL ‐ Code Snippets
- Sources of Error
- SQL Schema
- SRA queries
- Summarizer usage
- Taxonomy case study of misannotated Genbank entry
- Taxonomy prediction
- Translation Table for ORF 1ab maturation protein models
- Tree placement and taxonomy data
- Trees and alignments for Ribovirus orders and families
- Useful Links
- Using the Repository
- Viral contigs containing RdRP
- Wiki Management
- Working Data Dir