Page Index - ababaian/serratus GitHub Wiki
147 page(s) in this GitHub Wiki:
- Home
- .summary Reports
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- Access Data Release
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- Achaeavirus
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- ambivirus_extended_data
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- Apocryptovirus
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- Architecture and Pipeline
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- Assembly benchmark results for 8 coronavirus candidates datasets
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- Assembly Data
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- budget
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- Camaroon gut
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- Containers
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- Cov phylogenetic tree quality by monophylicity
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- Creating taxon specific slices of the Pfam HMM database
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- Darwin
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- Data Policy
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- deltavirus
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- Design of nucleotide summarizer scoring and depth estimates
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- DIAMOND nr
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- Experimental References
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- Find_novel_viruses
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- Find_novel_viruses_A_serratus.io
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- Find_novel_viruses_B_palmdb
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- Find_novel_viruses_C_microassembly
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- Find_novel_viruses_C_novel_cov
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- Find_novel_viruses_E_viromic
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- Finding transfer recombination events in the Spike protein
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- FLOM reference
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- Fr4NK
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- Hierarchical OTU classification of RdRPs
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- Kenya Virome
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- Manuscript Style Guide
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- Metagenomic Co Assembly Proof of Concept
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- Motifator, a new tool for classifiying RdRPs and close homologs
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- palmID: rubivirus and rubi like virus data
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- pangenome_design
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- PRICE de novo assembly
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- Project plan for big RdRp search
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- Proteome guided assembly for high divergence low coverage genomes
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- RdRP OTU system
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- RdRp trimming with hacked usearch v12
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- ref_cov3ma
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- ref_protref5
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- ref_rdrp1
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- Referenced software
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- RNA Deep Virome Assemblage
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- Running a Treesearch
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- Running an Experiment
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- Running Serratus
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- Seeking digital artist to help crowdfund Serratus
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- Sequence References
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- Serratus Annotation
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- Serratus Assembly
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- Serratus Examplars
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- Serratus Explorer
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- Serratus Lite
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- Serratus SQL Database Management
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- Serratus Website
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- SerratusSQL
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- SerratusSQL ‐ Code Snippets
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- Sources of Error
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- SQL Schema
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- SRA queries
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- Summarizer usage
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- Taxonomy case study of misannotated Genbank entry
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- Taxonomy prediction
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- Translation Table for ORF 1ab maturation protein models
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- Tree placement and taxonomy data
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- Trees and alignments for Ribovirus orders and families
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- Useful Links
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- Using the Repository
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- Viral contigs containing RdRP
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- Wiki Management
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- Working Data Dir
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