ambivirus_extended_data - ababaian/serratus GitHub Wiki

Extended Data for Extant hybrids of RNA viruses and viroid-like elements

Preprint: Extant hybrids of RNA viruses and viroid-like elements. (Forgia, Navarro et al., 2022)

Ambiviruses sequences

• ambi_rdrp_id90.fa: 422 Ambivirus RdRp sequences; centroids from 90% amino acid identity clustering
• ambi_genome_id90.fa: 612 Ambivirus putative complete genome sequences, centroids from 90% nucleotide identity clustering

Ambivirus RdRp phylogeny

• ambi_palm_msa.fa: Multiple sequence alignment of ambi-palmprints for constructing phylogeny
• ambi_tree.newick: Tree file for ambivirus phylogeny

INFERNAL Ribozyme Co-variation Models

• dvr5.cm Ribozyme CM models for "deltavirus", "hairpin", several "hammerhead", "twister" and "Varkud Satellite" motifs. Used to search the ~200K metagenome/metatranscriptome libraries in the SRA.

circular RNA bearing paired-ribozymes

• viroid-like_circles.tar.gz: Tar file containing ~32K circular RNA (viroid-like elements) sequences and metadata identified in the RDVA dataset.

RNA Deep Virome Assemblage

See RDVA page

License

All data is cc0 following INSDC/Serratus Data policies