Referenced software - ababaian/serratus GitHub Wiki
| Software |
Version |
| bcftools |
v1.7 |
| Bowtie2 |
v2.4.1 |
| BWA |
v0.7.17 |
| CD-HIT |
v4.8.1 |
| CheckV |
v0.6.0 |
| coronaSPAdes |
v3.15.3 |
| D3.js |
5.16.0 |
| DARTH |
maul |
| DIAMOND |
v2.0.8 |
| Dustmasker |
ncbi-blast:2.10.0 |
| EPA-ng |
v0.3.7 |
| Gappa |
v0.6.1 |
| getorf |
EMBOSS:6.6.0.0 |
| Grafana |
8.2.5 |
| HMMER3 |
v3.3 |
| Infernal |
v1.1.4 |
| IQTREE |
v.1.6.6 |
| MAFFT |
v.7.407 |
| MEGAHIT |
v1.2.9 |
| ModelTest-NG |
v0.1.3 |
| MUSCLE |
v3.8 |
| nidhoggr |
v0.1 |
| Palmscan |
v1.0.0 |
| ParGenes |
v1.1.2 |
| PostgreSQL |
10.14 |
| Prodigal |
v2.6.3 |
| Prometheus |
2.5.0 |
| RAxML-NG |
v0.9.0 |
| React |
16.13.1 |
| rnaviralSPAdes |
v3.15.3 |
| SAMtools |
v1.7 |
| seqkit |
v0.12.0 |
| seqtk |
github@7c04ce7 |
| Serratus |
v0.3.0 |
| snakemake |
v6.6.0 |
| TrimAL |
v1.14 |
| UBLAST |
usearch v11.0.667 |
| UCHIME2 |
usearch v8.0.1623 |
| USEARCH |
v11.0.667 |
| VADR |
1.1 |
| Virsorter2 |
v2.1 |