Page Index - veeninglab/BactMAP GitHub Wiki
171 page(s) in this GitHub Wiki:
- Home
- Welcome to the BactMAP wiki.
- What's new?
- Version 0.1.0.1
- Cite
- cellList
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- Check Datasets for Version Compatibility
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- Color Palettes
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- Combining Dataframes
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- Comparing Segmentations
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- Comparing Segmentations of Staphylococcus aureus
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- Comparing Segmentations of Streptococcus pneumoniae
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- Connecting Spots and Objects to Cells
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- Custom Analysis Part 1
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- Custom Analysis Part 2
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- Custom Analysis Part 3
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- Custom Analysis Part 4
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- Custom Analysis Part 5
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- Custom Analysis Part 6
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- Custom Analysis Part 7
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- Custom Analysis Part 8
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- Download & Install BactMAP
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- Example Datasets in BactMAP
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- extr_ISBatch
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- extr_Meshes
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- extr_MicrobeJ
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- extr_Morphometrics
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- extr_ObjectJ
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- extr_Original
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- extr_Oufti
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- extr_Spots
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- extr_SuperSeggerCells and extr_SuperSeggerClist
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- Genealogy Part 1
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- Genealogy Part 2
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- Genealogy Part 3
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- Genealogy Part 4
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- Genealogy Part 5
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- Genealogy Part 6
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- Genealogy Part 7
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- Genealogy Part 8
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- General Workflow
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- Importing data using BactMAP
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- Localization Part 1
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- Localization Part 2
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- Localization Part 3
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- Localization Part 4
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- Localization Part 5
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- Localization Part 6
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- Localization Tutorial Overview
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- mesh
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- micron
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- objects
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- Origin Localization in three Gram Positive Bacteria
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- Overview of Plot Functions
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- Phylogeny
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- Pixels2um
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- Plots using TIFFs
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- Plotting Genealogy
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- Plotting spot localization using createPlotlist()
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- Plotting Temporal Localization Part 1
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- Plotting Temporal Localization Part 2
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- Plotting Temporal Localization Part 3
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- Plotting Temporal Localization Part 4
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- Plotting Temporal Localization Part 5
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- Plotting Temporal Localization Part 6
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- Plotting Temporal Localization Part 7
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- Plotting Temporal Localization Part 8
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- Raw Images
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- Report an issue
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- Saving Data
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- Segmentation Tutorial Part 1
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- Segmentation Tutorial Part 2
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- Segmentation Tutorial Part 3
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- Segmentation Tutorial Part 4
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- Segmentation Tutorial Part 5
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- Segmentation Tutorial Part 6
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- Segmentation Tutorial Part 7
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- Segmentation Tutorial Part 8
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- Segmentation Tutorial Part 9
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- spots
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- Subcellular localization
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- The mesh dataframe
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- Time Lapse Analysis
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- Time Lapse of DnaX and FtsZ in the pneumococcus
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- Tutorial Custom Analysis
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- Tutorial Plotting Temporal Localization
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- Tutorials
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- Working with large data sets
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