Localization Tutorial Overview - veeninglab/BactMAP GitHub Wiki

Goal of the tutorial

In this tutorial, we will recreate figure 3 from our preprint on BactMAP. In this figure, we show the localization of the origin of replication in three different Gram-positive bacteria. On the way, you will learn:

  1. How to import data originating from different segmentation programs.
  2. How to plot the segmentations over the TIFF images using R and BactMAP.
  3. How to use createPlotList() to produce a set of plots summarizing the localization of your protein.
  4. How to edit plots using ggplot2.

Contents

  1. Before getting started
  2. Data Import
  3. Checking the Segmentation
  4. Using createPlotList()
  5. Editing Plots
  6. Resources
:arrow_left: Tutorials Overview :black_small_square: :black_medium_small_square: :black_medium_square: :black_medium_small_square: :black_small_square: Localization part 1: Before Getting Started :arrow_right: