Localization part 1 - veeninglab/BactMAP GitHub Wiki

1. Start R & load BactMAP. Find installation & loading instructions for BactMAP here.

!! 31.03.2020 One user found an error in BactMAP today now causing trouble with plotting heatmaps of spots in cells. I resolved this problem and saved this in the development version of BactMAP. The following days I will check it and implement an update. In the meantime: please download BactMAP from the development page using:

remotes::install_github("vrrenske/bactmap")

2. Get the datasets needed for the tutorial through this link. Download the zip file and extract & save it on your computer. If you want to do this tutorial using your own data, check BactMAP’s import functions here.
3. Set the working directory of your R session to the extracted folder "Localization". Specify the path using the command setwd(), for example:

setwd("C:/the/path/to/Localization")