Custom Analysis Part 8 - veeninglab/BactMAP GitHub Wiki
Resources
More on BactMAP functions used in this Tutorial
bactKymo()perc_Division()- Overview of Import Functions
- Data structures:
raw images and mesh
Tools, utilities & Further reading
- Hierarchical Clustering with TSclust
- Using ggplot2
- Saving Data
- Working with larger datasets
References
Montero, P., & Vilar, J. (2014). TSclust: An R Package for Time Series
Clustering. Journal of Statistical Software, 62(1), 1-43
Paintdakhi, A., Parry, B., Campos, M., Irnov, I., Elf, J., Surovtsev,
I., & Jacobs‐Wagner, C. (2016). Oufti: an integrated software package
for high‐accuracy, high‐throughput quantitative microscopy analysis.
Molecular microbiology, 99(4), 767-777.
Stylianidou, S., Brennan, C., Nissen, S. B., Kuwada, N. J., & Wiggins,
P. A. (2016). SuperSegger: robust image segmentation, analysis and
lineage tracking of bacterial cells. Molecular
microbiology, 102(4), 690-700.
Caldas, V. E., Punter, C. M., Ghodke, H., Robinson, A., & van Oijen, A.
M. (2015). iSBatch: a batch-processing platform for data analysis and
exploration of live-cell single-molecule microscopy images and other
hierarchical datasets. Molecular
BioSystems, 11(10), 2699-2708.