Plotting Temporal Localization Part 4 - veeninglab/BactMAP GitHub Wiki

To make cell towers, I use the connected pixel values and cell outlines (myCells_DnaX and myCells_FtsZ) as input for the function plotCellsTime(). I can give my preferred viridis color palette and the cell number cellN to the function:

plotCellsTime(myCells_DnaX$rawdata_turned, viridisoption="viridis", cellN=4)

As you see, this cell tower has too many intervals to make a good figure. Let’s subset the data again so we only take every 4th frame. For this, I use %%, the operator for the modulus.

plotCellsTime( myCells_DnaX$rawdata_turned[myCells_DnaX$rawdata_turned$frame%%4==0,],
               viridisoption="viridis",
               cellN=4)

Now the only thing that is left is to do the same for the myCells_FtsZ dataframe, here I give the cell tower the same color as the FtsZ kymograph, magma:

plotCellsTime( myCells_FtsZ$rawdata_turned[myCells_FtsZ$rawdata_turned$frame%%4==0,],
               viridisoption="magma",
               cellN=4)