Page Index - meyermicrobiolab/Meyer_Lab_Resources GitHub Wiki

102 page(s) in this GitHub Wiki:

• Home
• Welcome to the Lab-Resources wiki!
• RESOURCES
• PROJECTS and DATA
• ANCOM.R
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• Anvi'o Pangenomic Workflow
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• anvi'o workflow for metagenomes
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• Basic Genomics Workflow
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• Basic Metagenomics Workflow
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• Basic Metatranscriptomics Workflow
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• Best Practices in the Lab
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• BiG SCAPE for visualizing Biosynthetic Gene Clusters
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• Comparative genomics tools
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• Converting DADA2 output from R into QIIME 2 to run ANCOM
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• DAPI staining (cell counts)
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• Differential Abundance ‐ Options and Code
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• Dirichlet Multinomial
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• Exploration of Data in Phyloseq
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• Filtering out Low Abundance OTUS Sequence Variants
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• Getting the most Abundant Taxa
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• GitHub Cheat Sheet
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• Graduate Student Funding Opportunities
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• HiPerGator Cheat Sheet
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• How To: Cut Adapt for 16S Analysis
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• How to: multiQC ‐ summarize fastQC files
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• Importing Many Data Files at Once
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• Installing ALDEx, CoDaSeq, dada2, phyloseq with devtools and BiocManager
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• Julie's command line cheatsheet
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• Julie's R tricks
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• Lab Chats during WFH
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• Lab Meeting 8 16 2019 agenda
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• Lab Meetings
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• Making a heatmap presence absence table
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• Meyer Lab Expectations
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• oldResources
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• Outreach Ideas
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• Phinch
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• Preparing for Qualifying Exams
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• Preparing Phyloseq amplicon data for LEfSe
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• Professional Development tools
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• Projects & Data
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• Qiime2 Pipeline
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• R Color Palettes and Point Shapes
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• Resources
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• Roary and Phandango
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• Run an R script on Hipergator
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• Sorting Samples by Metadata (get rid of default alphabetical order)
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• Submitting Sequences to NCBI by FTP
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• Subsetting Samples from a Phyloseq Object
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• Upcoming Conferences
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• Using command line to change the name of your files in HiPerGator.
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• Work life balance self care
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• Writing tips
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