Page Index - bpp/bpp-tutorial-geneflow GitHub Wiki

52 page(s) in this GitHub Wiki:

• Home
• Maximum likelihood inference
• Inferring species trees
• Inferring gene flow
• Species delimitation
• BPP resources
• BPP assumptions models and input files
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• Concatenation
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• Concatenation vs. Species Trees
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• Control file format and options
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• Hypothesis testing with BPP
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• Inferring gene flow
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• Inferring maximum likelihood trees
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• Installation
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• Introgression model (MSC‐I)
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• Maximum likelihood inference
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• Migration model (MSC‐M)
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• Parallelization and checkpointing
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• Parameter estimation under the MSC (Baobab dataset)
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• Parameter estimation under the MSC‐I (Baobab dataset, model A)
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• Parameter estimation under the MSC‐I (Baobab dataset, model D)
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• Parameter estimation under the MSC‐M (Baobab dataset)
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• results
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• Sequence alignment
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• Species delimitation
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• Species tree inference
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• Species tree inference (Baobab dataset)
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• Species Tree inference with Astral
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• Wall lizard dataset
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