Species tree inference - bpp/bpp-tutorial-geneflow GitHub Wiki Species tree inference with BPP Installation Compiling BPP from source Pre-compiled BPP binaries Setting up the PATH variable - Linux example Obtaining the tutorial files BPP assumptions, models and input files Assumptions MSC Model Types of analysis Control file format and options Imap file Sequence file Control file Demo: Species tree inference (Baobab dataset) Running BPP Output files Demo: Parameter estimation under the MSC (Baobab dataset) Running BPP Output files